Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F7R84_RS14250 | Genome accession | NZ_CP044436 |
| Coordinates | 3044313..3044846 (+) | Length | 177 a.a. |
| NCBI ID | WP_104836699.1 | Uniprot ID | - |
| Organism | Proteus mirabilis strain C55 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3008980..3049136 | 3044313..3044846 | within | 0 |
Gene organization within MGE regions
Location: 3008980..3049136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7R84_RS13985 (F7R84_14090) | - | 3008980..3009186 (+) | 207 | WP_104836668.1 | DNA polymerase III subunit theta | - |
| F7R84_RS20010 (F7R84_14095) | - | 3009371..3010261 (+) | 891 | WP_350421986.1 | acyltransferase family protein | - |
| F7R84_RS19795 | - | 3010321..3012213 (-) | 1893 | WP_233902360.1 | phage head-binding domain-containing protein | - |
| F7R84_RS14000 (F7R84_14105) | - | 3012327..3014270 (-) | 1944 | WP_104836670.1 | DNA transfer protein | - |
| F7R84_RS19800 (F7R84_14110) | - | 3014255..3015823 (-) | 1569 | WP_104836873.1 | phage DNA ejection protein | - |
| F7R84_RS14010 (F7R84_14115) | - | 3015833..3016492 (-) | 660 | WP_104836671.1 | DNA transfer protein | - |
| F7R84_RS14015 (F7R84_14120) | - | 3016486..3016947 (-) | 462 | WP_036976869.1 | DUF2824 family protein | - |
| F7R84_RS14020 (F7R84_14125) | - | 3016947..3017645 (-) | 699 | WP_104836672.1 | phage tail protein | - |
| F7R84_RS19925 (F7R84_14130) | - | 3017645..3019426 (-) | 1782 | WP_320204293.1 | packaged DNA stabilization protein | - |
| F7R84_RS14035 (F7R84_14140) | - | 3019398..3019895 (-) | 498 | WP_104836673.1 | packaged DNA stabilization gp4 family protein | - |
| F7R84_RS14040 (F7R84_14145) | - | 3019873..3020082 (-) | 210 | WP_104836674.1 | hypothetical protein | - |
| F7R84_RS14045 (F7R84_14150) | - | 3020134..3021417 (-) | 1284 | WP_063108518.1 | P22 phage major capsid protein family protein | - |
| F7R84_RS14050 (F7R84_14155) | - | 3021417..3022331 (-) | 915 | WP_104836675.1 | scaffolding protein | - |
| F7R84_RS14055 (F7R84_14160) | - | 3022346..3024436 (-) | 2091 | WP_104836676.1 | portal protein | - |
| F7R84_RS14060 (F7R84_14165) | - | 3024439..3025758 (-) | 1320 | WP_233902411.1 | terminase large subunit | - |
| F7R84_RS14065 (F7R84_14170) | - | 3025910..3026401 (-) | 492 | WP_104836678.1 | DNA-packaging protein | - |
| F7R84_RS14070 (F7R84_14175) | - | 3026590..3027039 (-) | 450 | WP_104836679.1 | collagen-like protein | - |
| F7R84_RS14075 (F7R84_14180) | - | 3027049..3027273 (-) | 225 | WP_036977151.1 | DUF2560 family protein | - |
| F7R84_RS14080 (F7R84_14185) | - | 3027621..3027986 (-) | 366 | WP_036976897.1 | hypothetical protein | - |
| F7R84_RS14085 (F7R84_14190) | - | 3027986..3028393 (-) | 408 | WP_407027437.1 | lysis protein | - |
| F7R84_RS14090 (F7R84_14195) | - | 3028435..3028839 (-) | 405 | WP_104836681.1 | structural protein | - |
| F7R84_RS14095 (F7R84_14200) | - | 3028832..3029119 (-) | 288 | WP_104836682.1 | phage holin family protein | - |
| F7R84_RS14100 (F7R84_14205) | - | 3029116..3029505 (-) | 390 | WP_004916901.1 | putative holin | - |
| F7R84_RS14105 (F7R84_14210) | - | 3029990..3030745 (-) | 756 | WP_104836683.1 | antitermination protein | - |
| F7R84_RS14110 (F7R84_14215) | - | 3030742..3030933 (-) | 192 | WP_063693385.1 | hypothetical protein | - |
| F7R84_RS14115 (F7R84_14220) | - | 3030933..3031553 (-) | 621 | WP_104836684.1 | recombination protein NinG | - |
| F7R84_RS14120 | - | 3031557..3031715 (-) | 159 | WP_158660329.1 | hypothetical protein | - |
| F7R84_RS14125 (F7R84_14225) | - | 3031827..3032270 (-) | 444 | WP_104836685.1 | recombination protein NinB | - |
| F7R84_RS14130 (F7R84_14230) | - | 3032272..3032481 (-) | 210 | WP_071233478.1 | DUF7279 family protein | - |
| F7R84_RS14140 (F7R84_14240) | - | 3032650..3032874 (-) | 225 | WP_071233638.1 | DUF551 domain-containing protein | - |
| F7R84_RS14145 (F7R84_14245) | - | 3032874..3033086 (-) | 213 | WP_237731540.1 | MarR family transcriptional regulator | - |
| F7R84_RS14150 (F7R84_14250) | - | 3033086..3033310 (-) | 225 | WP_202719664.1 | hypothetical protein | - |
| F7R84_RS14155 | - | 3033323..3033490 (-) | 168 | WP_152964332.1 | hypothetical protein | - |
| F7R84_RS14160 (F7R84_14255) | rdgC | 3033510..3034421 (-) | 912 | WP_063108498.1 | recombination-associated protein RdgC | - |
| F7R84_RS14165 (F7R84_14260) | - | 3034432..3035118 (-) | 687 | WP_104836688.1 | replication protein P | - |
| F7R84_RS14170 (F7R84_14265) | - | 3035115..3036053 (-) | 939 | WP_104836689.1 | replication protein | - |
| F7R84_RS14175 (F7R84_14270) | - | 3036050..3036733 (-) | 684 | WP_104836690.1 | phage antirepressor KilAC domain-containing protein | - |
| F7R84_RS14180 (F7R84_14275) | - | 3036755..3037099 (-) | 345 | WP_104836691.1 | hypothetical protein | - |
| F7R84_RS14185 (F7R84_14280) | - | 3037235..3037420 (-) | 186 | WP_036895075.1 | Cro/CI family transcriptional regulator | - |
| F7R84_RS14190 (F7R84_14285) | - | 3037516..3038226 (+) | 711 | WP_036976930.1 | LexA family protein | - |
| F7R84_RS14195 (F7R84_14290) | - | 3038467..3039384 (+) | 918 | WP_064497308.1 | SDH family Clp fold serine proteinase | - |
| F7R84_RS14200 (F7R84_14295) | - | 3039936..3040205 (+) | 270 | WP_104836692.1 | hypothetical protein | - |
| F7R84_RS14205 (F7R84_14300) | - | 3040221..3040709 (-) | 489 | WP_158660331.1 | hypothetical protein | - |
| F7R84_RS14210 (F7R84_14305) | - | 3041164..3041397 (+) | 234 | WP_104836694.1 | hypothetical protein | - |
| F7R84_RS14215 (F7R84_14310) | - | 3041399..3041698 (+) | 300 | WP_104836695.1 | hypothetical protein | - |
| F7R84_RS14220 (F7R84_14315) | - | 3041767..3042027 (+) | 261 | WP_004247709.1 | hypothetical protein | - |
| F7R84_RS14225 | - | 3042082..3042237 (+) | 156 | WP_170110775.1 | hypothetical protein | - |
| F7R84_RS14230 (F7R84_14320) | - | 3042245..3042499 (+) | 255 | WP_104836696.1 | hypothetical protein | - |
| F7R84_RS14235 (F7R84_14325) | - | 3042496..3042747 (+) | 252 | WP_004247464.1 | hypothetical protein | - |
| F7R84_RS14240 (F7R84_14330) | - | 3042744..3043628 (+) | 885 | WP_104836697.1 | RecT family recombinase | - |
| F7R84_RS14245 (F7R84_14335) | - | 3043625..3044323 (+) | 699 | WP_104836698.1 | lambda exonuclease family protein | - |
| F7R84_RS14250 (F7R84_14340) | ssb | 3044313..3044846 (+) | 534 | WP_104836699.1 | single-stranded DNA-binding protein | Machinery gene |
| F7R84_RS14255 (F7R84_14345) | - | 3044862..3045170 (+) | 309 | WP_104836700.1 | hypothetical protein | - |
| F7R84_RS14260 | - | 3045211..3045393 (+) | 183 | WP_046334496.1 | hypothetical protein | - |
| F7R84_RS14265 (F7R84_14355) | - | 3045432..3045614 (+) | 183 | WP_063691749.1 | hypothetical protein | - |
| F7R84_RS14270 (F7R84_14360) | - | 3045607..3045900 (+) | 294 | WP_104836701.1 | hypothetical protein | - |
| F7R84_RS14275 | - | 3045900..3046058 (+) | 159 | WP_158660332.1 | hypothetical protein | - |
| F7R84_RS14280 | - | 3046213..3046374 (+) | 162 | WP_158660333.1 | hypothetical protein | - |
| F7R84_RS14285 (F7R84_14365) | - | 3046367..3046684 (+) | 318 | WP_104836702.1 | phage protein NinX family protein | - |
| F7R84_RS14290 (F7R84_14370) | - | 3046873..3047475 (+) | 603 | WP_104836704.1 | MT-A70 family methyltransferase | - |
| F7R84_RS19805 (F7R84_14380) | - | 3047764..3048096 (+) | 333 | WP_094959881.1 | helix-turn-helix domain-containing protein | - |
| F7R84_RS14295 (F7R84_14385) | - | 3047979..3049136 (+) | 1158 | WP_233902414.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19449.78 Da Isoelectric Point: 6.7135
>NTDB_id=389899 F7R84_RS14250 WP_104836699.1 3044313..3044846(+) (ssb) [Proteus mirabilis strain C55]
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQNGQDRYTTEVVVNVGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQAPKQASNNQTPQSEPPQDWDDPI
PFAPIGLPYPRHAIYVI
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQNGQDRYTTEVVVNVGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQAPKQASNNQTPQSEPPQDWDDPI
PFAPIGLPYPRHAIYVI
Nucleotide
Download Length: 534 bp
>NTDB_id=389899 F7R84_RS14250 WP_104836699.1 3044313..3044846(+) (ssb) [Proteus mirabilis strain C55]
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTTATTGGTCACTTGGGGCAGGATCCAGAAATCCGTTATATGCCATCAGG
TGGCGCAGTCGCTAATCTCACACTAGCCACATCGGAATCGTGGCGTGACAAGCAGACTGGTGAGATGAAGGAGAAAACTG
AGTGGCATCGAGTGTGCATCTTCGGAAAATTAGCAGAAATTGCAGGTGAATATCTGAGAAAAGGCTCACAGGTATACATA
GAAGGCTCTCTGCAAACCAGAAAATGGACTGACCAGAACGGACAGGACCGATACACAACGGAAGTAGTGGTTAATGTCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGCCAGCCTC
AGCAACCACAAGCACCAAAACAAGCATCGAATAATCAAACACCGCAAAGTGAACCTCCTCAAGATTGGGATGATCCTATA
CCTTTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTTATTGGTCACTTGGGGCAGGATCCAGAAATCCGTTATATGCCATCAGG
TGGCGCAGTCGCTAATCTCACACTAGCCACATCGGAATCGTGGCGTGACAAGCAGACTGGTGAGATGAAGGAGAAAACTG
AGTGGCATCGAGTGTGCATCTTCGGAAAATTAGCAGAAATTGCAGGTGAATATCTGAGAAAAGGCTCACAGGTATACATA
GAAGGCTCTCTGCAAACCAGAAAATGGACTGACCAGAACGGACAGGACCGATACACAACGGAAGTAGTGGTTAATGTCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGCCAGCCTC
AGCAACCACAAGCACCAAAACAAGCATCGAATAATCAAACACCGCAAAGTGAACCTCCTCAAGATTGGGATGATCCTATA
CCTTTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.797 |
100 |
0.678 |
| ssb | Glaesserella parasuis strain SC1401 |
49.733 |
100 |
0.525 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
99.435 |
0.441 |
| ssb | Neisseria meningitidis MC58 |
42.373 |
100 |
0.424 |