Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F7R84_RS12870 | Genome accession | NZ_CP044436 |
| Coordinates | 2716212..2716709 (+) | Length | 165 a.a. |
| NCBI ID | WP_192176692.1 | Uniprot ID | - |
| Organism | Proteus mirabilis strain C55 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2680407..2726638 | 2716212..2716709 | within | 0 |
Gene organization within MGE regions
Location: 2680407..2726638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7R84_RS12615 (F7R84_12695) | - | 2680407..2681225 (+) | 819 | WP_049210597.1 | hypothetical protein | - |
| F7R84_RS12620 (F7R84_12700) | - | 2681358..2681492 (+) | 135 | Protein_2442 | DNA polymerase III subunit theta | - |
| F7R84_RS12625 (F7R84_12705) | - | 2681598..2681936 (-) | 339 | WP_049210595.1 | hypothetical protein | - |
| F7R84_RS12630 (F7R84_12710) | - | 2682019..2683398 (-) | 1380 | WP_192176679.1 | pyocin knob domain-containing protein | - |
| F7R84_RS12635 (F7R84_12715) | - | 2683415..2683681 (-) | 267 | WP_036905825.1 | hypothetical protein | - |
| F7R84_RS12640 (F7R84_12720) | - | 2683678..2684364 (-) | 687 | WP_112843682.1 | hypothetical protein | - |
| F7R84_RS12645 (F7R84_12725) | - | 2684364..2684696 (-) | 333 | WP_036970230.1 | hypothetical protein | - |
| F7R84_RS12650 (F7R84_12730) | - | 2684686..2687607 (-) | 2922 | WP_192176780.1 | phage tail tip fiber protein | - |
| F7R84_RS12655 (F7R84_12735) | - | 2687647..2688045 (-) | 399 | WP_049210594.1 | DUF6950 family protein | - |
| F7R84_RS12660 (F7R84_12740) | - | 2688111..2688755 (-) | 645 | WP_172767677.1 | hypothetical protein | - |
| F7R84_RS12665 (F7R84_12745) | - | 2688797..2689378 (-) | 582 | WP_017827264.1 | hypothetical protein | - |
| F7R84_RS12670 (F7R84_12750) | - | 2689375..2689974 (-) | 600 | WP_036901058.1 | hypothetical protein | - |
| F7R84_RS12675 (F7R84_12755) | - | 2689975..2693280 (-) | 3306 | WP_172767676.1 | phage tail tape measure protein | - |
| F7R84_RS12680 (F7R84_12760) | - | 2693537..2693887 (-) | 351 | WP_017827267.1 | phage tail protein | - |
| F7R84_RS12685 (F7R84_12765) | - | 2693887..2694363 (-) | 477 | WP_060961287.1 | phage tail protein | - |
| F7R84_RS12690 (F7R84_12770) | - | 2694386..2694790 (-) | 405 | WP_017827269.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| F7R84_RS12695 (F7R84_12775) | - | 2694787..2695176 (-) | 390 | WP_017827270.1 | hypothetical protein | - |
| F7R84_RS12700 (F7R84_12780) | - | 2695163..2695489 (-) | 327 | WP_071233556.1 | phage head closure protein | - |
| F7R84_RS12705 (F7R84_12785) | - | 2695489..2695794 (-) | 306 | WP_036901048.1 | head-tail connector protein | - |
| F7R84_RS12710 (F7R84_12790) | - | 2695888..2697096 (-) | 1209 | WP_071233557.1 | phage major capsid protein | - |
| F7R84_RS12715 (F7R84_12795) | - | 2697110..2697754 (-) | 645 | WP_170832166.1 | HK97 family phage prohead protease | - |
| F7R84_RS12720 (F7R84_12800) | - | 2697732..2698961 (-) | 1230 | WP_071233558.1 | phage portal protein | - |
| F7R84_RS12725 (F7R84_12805) | - | 2698961..2699140 (-) | 180 | WP_049219082.1 | hypothetical protein | - |
| F7R84_RS12730 (F7R84_12810) | - | 2699150..2700889 (-) | 1740 | WP_192176680.1 | terminase large subunit | - |
| F7R84_RS12735 (F7R84_12815) | - | 2700892..2701362 (-) | 471 | WP_071233560.1 | phage terminase small subunit P27 family | - |
| F7R84_RS12740 (F7R84_12820) | - | 2701510..2701707 (-) | 198 | WP_049218006.1 | hypothetical protein | - |
| F7R84_RS12745 (F7R84_12825) | - | 2701704..2702054 (-) | 351 | WP_192176681.1 | HNH endonuclease | - |
| F7R84_RS12750 (F7R84_12830) | - | 2702120..2702626 (-) | 507 | WP_192176682.1 | hypothetical protein | - |
| F7R84_RS12755 (F7R84_12835) | - | 2702693..2703187 (-) | 495 | WP_192176683.1 | hypothetical protein | - |
| F7R84_RS12760 (F7R84_12840) | - | 2703287..2703748 (-) | 462 | WP_192176684.1 | lysis protein | - |
| F7R84_RS12765 | - | 2703751..2703909 (-) | 159 | WP_167759274.1 | hypothetical protein | - |
| F7R84_RS12770 (F7R84_12845) | - | 2703891..2704361 (-) | 471 | WP_071425752.1 | lysozyme | - |
| F7R84_RS12775 (F7R84_12850) | - | 2704361..2704630 (-) | 270 | WP_004250558.1 | hypothetical protein | - |
| F7R84_RS12780 (F7R84_12855) | - | 2704990..2705313 (-) | 324 | WP_036905247.1 | GrlR family regulatory protein | - |
| F7R84_RS12785 (F7R84_12860) | - | 2705500..2706522 (-) | 1023 | WP_161779689.1 | DNA-methyltransferase | - |
| F7R84_RS12790 (F7R84_12865) | - | 2706596..2706790 (-) | 195 | WP_049210579.1 | hypothetical protein | - |
| F7R84_RS12795 (F7R84_12870) | - | 2706958..2707629 (-) | 672 | WP_070486601.1 | bacteriophage antitermination protein Q | - |
| F7R84_RS12800 (F7R84_12875) | - | 2707657..2708682 (-) | 1026 | WP_192176685.1 | DUF968 domain-containing protein | - |
| F7R84_RS12805 (F7R84_12880) | - | 2708679..2709482 (-) | 804 | WP_192176686.1 | KilA-N domain-containing protein | - |
| F7R84_RS12810 (F7R84_12885) | - | 2709501..2709887 (-) | 387 | WP_192176687.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F7R84_RS12815 (F7R84_12890) | - | 2709960..2710355 (-) | 396 | WP_192176688.1 | hypothetical protein | - |
| F7R84_RS12820 (F7R84_12895) | - | 2710352..2710990 (-) | 639 | WP_192176781.1 | phage N-6-adenine-methyltransferase | - |
| F7R84_RS12825 (F7R84_12900) | - | 2710990..2712051 (-) | 1062 | WP_192176689.1 | conserved phage C-terminal domain-containing protein | - |
| F7R84_RS12830 (F7R84_12905) | - | 2712064..2712243 (-) | 180 | WP_004247132.1 | DUF4222 domain-containing protein | - |
| F7R84_RS12835 | - | 2712240..2712413 (-) | 174 | WP_004251659.1 | hypothetical protein | - |
| F7R84_RS12840 (F7R84_12910) | - | 2712501..2712959 (-) | 459 | WP_036900998.1 | YmfL family putative regulatory protein | - |
| F7R84_RS12845 (F7R84_12915) | - | 2713011..2713244 (-) | 234 | WP_036900996.1 | transcriptional regulator | - |
| F7R84_RS12850 (F7R84_12920) | - | 2713349..2714038 (+) | 690 | WP_227718526.1 | LexA family transcriptional regulator | - |
| F7R84_RS12855 (F7R84_12925) | - | 2714161..2714364 (+) | 204 | WP_049255036.1 | hypothetical protein | - |
| F7R84_RS12860 (F7R84_12930) | rdgC | 2714708..2715604 (+) | 897 | WP_192176690.1 | recombination-associated protein RdgC | - |
| F7R84_RS12865 (F7R84_12935) | - | 2715686..2716219 (+) | 534 | WP_192176691.1 | HD family hydrolase | - |
| F7R84_RS12870 (F7R84_12940) | ssb | 2716212..2716709 (+) | 498 | WP_192176692.1 | single-stranded DNA-binding protein | Machinery gene |
| F7R84_RS12875 (F7R84_12945) | - | 2716723..2717424 (+) | 702 | WP_192176693.1 | hypothetical protein | - |
| F7R84_RS12880 (F7R84_12950) | - | 2717417..2718004 (+) | 588 | WP_192176694.1 | hypothetical protein | - |
| F7R84_RS12885 (F7R84_12955) | - | 2718004..2718399 (+) | 396 | WP_192176695.1 | chromosome partitioning protein ParB | - |
| F7R84_RS12890 (F7R84_12960) | - | 2718460..2718672 (+) | 213 | WP_075205014.1 | excisionase | - |
| F7R84_RS12895 (F7R84_12965) | - | 2718624..2719805 (+) | 1182 | WP_192176696.1 | Arm DNA-binding domain-containing protein | - |
| F7R84_RS19915 | - | 2720481..2720543 (+) | 63 | WP_308699235.1 | hypothetical protein | - |
| F7R84_RS12900 (F7R84_12970) | - | 2720559..2721011 (+) | 453 | WP_306470705.1 | AAA family ATPase | - |
| F7R84_RS12905 (F7R84_12975) | - | 2721061..2721513 (-) | 453 | WP_104459233.1 | NUDIX hydrolase | - |
| F7R84_RS12910 (F7R84_12980) | - | 2721808..2723220 (+) | 1413 | WP_104459232.1 | hypothetical protein | - |
| F7R84_RS19995 | - | 2723525..2723614 (-) | 90 | WP_349253314.1 | hypothetical protein | - |
| F7R84_RS12920 (F7R84_12990) | - | 2724218..2726638 (+) | 2421 | WP_110706573.1 | type I restriction-modification system subunit M | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18115.57 Da Isoelectric Point: 7.1639
>NTDB_id=389898 F7R84_RS12870 WP_192176692.1 2716212..2716709(+) (ssb) [Proteus mirabilis strain C55]
MANGSVNKVILIGNLGRDPEIRYLPSGGAIAYLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIIVKIGGSMQMLGGASKSAGSQPAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAIAYLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIIVKIGGSMQMLGGASKSAGSQPAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
Nucleotide
Download Length: 498 bp
>NTDB_id=389898 F7R84_RS12870 WP_192176692.1 2716212..2716709(+) (ssb) [Proteus mirabilis strain C55]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTATTGCTTATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTTGTTTTGTTTGGAAAACTCGCCGATATCGCCAGTGGCTATTTGTGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTATTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCGCAGCAAAACCAACCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCGATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTATTGCTTATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTTGTTTTGTTTGGAAAACTCGCCGATATCGCCAGTGGCTATTTGTGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTATTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCGCAGCAAAACCAACCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCGATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.497 |
100 |
0.606 |
| ssb | Glaesserella parasuis strain SC1401 |
48.619 |
100 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
41.243 |
100 |
0.442 |
| ssb | Neisseria gonorrhoeae MS11 |
41.243 |
100 |
0.442 |