Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7G16_RS03995 Genome accession   NZ_CP044352
Coordinates   936799..937245 (-) Length   148 a.a.
NCBI ID   WP_004088866.1    Uniprot ID   Q87B55
Organism   Xylella fastidiosa strain ATCC 35879     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 935708..944597 936799..937245 within 0


Gene organization within MGE regions


Location: 935708..944597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G16_RS03990 (F7G16_04185) - 936505..936780 (-) 276 WP_011098179.1 hypothetical protein -
  F7G16_RS03995 (F7G16_04190) ssb 936799..937245 (-) 447 WP_004088866.1 single-stranded DNA-binding protein Machinery gene
  F7G16_RS04000 (F7G16_04195) - 937229..937558 (-) 330 WP_011098178.1 DUF5131 family protein -
  F7G16_RS04005 - 937476..937649 (+) 174 WP_155115078.1 hypothetical protein -
  F7G16_RS04010 (F7G16_04200) - 937751..938152 (-) 402 WP_038233152.1 hypothetical protein -
  F7G16_RS04015 (F7G16_04205) - 938151..939206 (+) 1056 WP_038233149.1 DNA primase -
  F7G16_RS04020 (F7G16_04210) - 939203..940672 (+) 1470 WP_038233147.1 VapE domain-containing protein -
  F7G16_RS04025 (F7G16_04215) - 940937..941677 (+) 741 WP_228446148.1 hypothetical protein -
  F7G16_RS04030 (F7G16_04220) - 941674..943772 (+) 2099 Protein_769 phage terminase large subunit family protein -
  F7G16_RS12100 (F7G16_04225) - 943849..944085 (+) 237 WP_004088842.1 hypothetical protein -
  F7G16_RS04040 (F7G16_04230) - 944082..944597 (+) 516 WP_004088839.1 phage portal protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16607.50 Da        Isoelectric Point: 7.3545

>NTDB_id=389608 F7G16_RS03995 WP_004088866.1 936799..937245(-) (ssb) [Xylella fastidiosa strain ATCC 35879]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=389608 F7G16_RS03995 WP_004088866.1 936799..937245(-) (ssb) [Xylella fastidiosa strain ATCC 35879]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87B55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

40.909

100

0.486
  ssb Neisseria meningitidis MC58

38.15

100

0.446
  ssb Neisseria gonorrhoeae MS11

38.15

100

0.446
  ssb Glaesserella parasuis strain SC1401

42.029

93.243

0.392

Multiple sequence alignment