Detailed information NTG0389410

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HHM66_RS00365
• Genome accession: NZ_CP053074
• Coordinates: 58751..59749 (+)
• Length: 332 a.a.
• NCBI ID: WP_015057190.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 53751..64749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHM66_RS00345 (HHM66_00345)	-	54679..55935 (+)	1257	WP_015057188.1	DUF4041 domain-containing protein	-
HHM66_RS00350 (HHM66_00350)	-	55928..56137 (+)	210	WP_014611912.1	hypothetical protein	-
HHM66_RS00355 (HHM66_00355)	purB	56186..57478 (+)	1293	WP_003056595.1	adenylosuccinate lyase	-
HHM66_RS00360 (HHM66_00360)	comR	57621..58532 (+)	912	WP_003060893.1	XRE family transcriptional regulator	Regulator
HHM66_RS10845	comS	58619..58717 (+)	99	WP_198763767.1	quorum-sensing system DWW-type pheromone	Regulator
HHM66_RS00365 (HHM66_00365)	ruvB	58751..59749 (+)	999	WP_015057190.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HHM66_RS00370 (HHM66_00370)	-	59884..60315 (+)	432	WP_003059365.1	low molecular weight protein-tyrosine-phosphatase	-
HHM66_RS00375 (HHM66_00375)	-	60344..60745 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
HHM66_RS00380 (HHM66_00380)	-	60742..62517 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37274.73 Da
• Isoelectric Point: 4.5556

>NTDB_id=389410 HHM66_RS00365 WP_015057190.1 58751..59749(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPYPSK

Nucleotide

• Length: 999 bp

>NTDB_id=389410 HHM66_RS00365 WP_015057190.1 58751..59749(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGATCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.795	0.593
ruvB	Helicobacter pylori 26695	50.613	98.193	0.497
ruvB	Synechocystis sp. PCC 6803	50	95.783	0.479