Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LPB220_RS03165 Genome accession   NZ_CP044230
Coordinates   586967..587626 (-) Length   219 a.a.
NCBI ID   WP_150905490.1    Uniprot ID   A0A5J6LKX3
Organism   Streptococcus sp. LPB0220     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581967..592626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS03145 (LPB220_03145) - 583162..583737 (+) 576 WP_045759156.1 YutD family protein -
  LPB220_RS03150 (LPB220_03150) rlmN 583744..584832 (+) 1089 WP_150905486.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LPB220_RS03155 (LPB220_03155) - 584819..585346 (+) 528 WP_150905488.1 VanZ family protein -
  LPB220_RS03160 (LPB220_03160) trpB 585772..586959 (+) 1188 WP_003017923.1 tryptophan synthase subunit beta -
  LPB220_RS03165 (LPB220_03165) cclA/cilC 586967..587626 (-) 660 WP_150905490.1 prepilin peptidase Machinery gene
  LPB220_RS03170 (LPB220_03170) - 587714..587932 (+) 219 WP_003017930.1 YqgQ family protein -
  LPB220_RS03175 (LPB220_03175) - 587932..588315 (+) 384 WP_049491311.1 rhodanese-like domain-containing protein -
  LPB220_RS03180 (LPB220_03180) - 588359..589084 (-) 726 WP_150905492.1 16S rRNA pseudouridine(516) synthase -
  LPB220_RS03185 (LPB220_03185) typA 589263..591110 (+) 1848 WP_003017941.1 translational GTPase TypA -
  LPB220_RS03190 (LPB220_03190) - 591134..591382 (+) 249 WP_004219693.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25022.22 Da        Isoelectric Point: 8.1288

>NTDB_id=388982 LPB220_RS03165 WP_150905490.1 586967..587626(-) (cclA/cilC) [Streptococcus sp. LPB0220]
MINFYFFTIGTCIASFLGLVVDRFPNQSILAPRSHCNHCQHVLGVWDLIPIISQLLHRFRCRYCHQTYPFWYCLFEVWSG
LLFLACANGFLSLPQLLTLLGVAVLAIYDLRFMEYPLVIWCCLHALVLFLSGSNLLMLVFLLLAIGAHFFFIGMGAGDFL
LLATFSLSFSSTKILILIQIASILGILVFALKKERDRIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=388982 LPB220_RS03165 WP_150905490.1 586967..587626(-) (cclA/cilC) [Streptococcus sp. LPB0220]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGTATCGCCTCTTTTTTGGGGCTCGTTGTCGATCGTTTTCCAAACCA
ATCCATTCTTGCTCCTCGCAGTCATTGTAATCACTGTCAGCACGTCCTTGGAGTTTGGGATCTCATCCCCATTATCTCGC
AACTACTCCATCGTTTTCGCTGCCGCTATTGTCATCAGACCTATCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTACTCTTTTTAGCCTGCGCCAATGGTTTCCTTTCTCTGCCTCAGCTTCTAACACTACTAGGAGTAGCTGTTTTAGCCAT
TTATGACCTTCGCTTTATGGAATACCCCTTGGTCATCTGGTGCTGTCTCCATGCCTTGGTCCTCTTTTTATCCGGTAGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCGATAGGAGCTCACTTTTTCTTTATCGGAATGGGAGCAGGAGATTTCCTC
TTACTAGCTACCTTCTCGCTAAGCTTTTCTTCTACTAAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CGTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTACCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LKX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

55.072

94.521

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae TIGR4

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae Rx1

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae D39

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae R6

54.589

94.521

0.516

Multiple sequence alignment