Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | LPB220_RS01250 | Genome accession | NZ_CP044230 |
| Coordinates | 213565..214518 (+) | Length | 317 a.a. |
| NCBI ID | WP_021154287.1 | Uniprot ID | - |
| Organism | Streptococcus sp. LPB0220 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 208565..219518
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB220_RS01210 (LPB220_01210) | - | 209325..209714 (+) | 390 | WP_042759849.1 | DUF1033 family protein | - |
| LPB220_RS01215 (LPB220_01215) | comYA | 209802..210743 (+) | 942 | WP_021154281.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LPB220_RS01220 (LPB220_01220) | comYB | 210676..211707 (+) | 1032 | WP_176745544.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LPB220_RS01225 (LPB220_01225) | comYC | 211704..212021 (+) | 318 | WP_150905144.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LPB220_RS01230 (LPB220_01230) | comYD | 212011..212415 (+) | 405 | WP_003004513.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LPB220_RS01235 (LPB220_01235) | comGE | 212381..212668 (+) | 288 | WP_003004353.1 | competence type IV pilus minor pilin ComGE | - |
| LPB220_RS01240 (LPB220_01240) | comGF/cglF | 212658..213110 (+) | 453 | WP_031572613.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LPB220_RS01245 (LPB220_01245) | comGG | 213067..213534 (+) | 468 | WP_225305918.1 | competence type IV pilus minor pilin ComGG | - |
| LPB220_RS01250 (LPB220_01250) | comYH | 213565..214518 (+) | 954 | WP_021154287.1 | class I SAM-dependent methyltransferase | Machinery gene |
| LPB220_RS01255 (LPB220_01255) | - | 214570..215763 (+) | 1194 | WP_150905146.1 | acetate kinase | - |
| LPB220_RS01260 (LPB220_01260) | - | 215836..216567 (+) | 732 | WP_150905148.1 | CPBP family intramembrane glutamic endopeptidase | - |
| LPB220_RS01265 (LPB220_01265) | folP | 216730..217680 (+) | 951 | WP_070586317.1 | dihydropteroate synthase | - |
| LPB220_RS01270 (LPB220_01270) | - | 217681..218991 (+) | 1311 | WP_070586318.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35962.78 Da Isoelectric Point: 4.2414
>NTDB_id=388963 LPB220_RS01250 WP_021154287.1 213565..214518(+) (comYH) [Streptococcus sp. LPB0220]
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNAMYLEGKTDLDIVKNNSQKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLKIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKAWLKDKAQILAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNAMYLEGKTDLDIVKNNSQKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLKIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKAWLKDKAQILAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
Nucleotide
Download Length: 954 bp
>NTDB_id=388963 LPB220_RS01250 WP_021154287.1 213565..214518(+) (comYH) [Streptococcus sp. LPB0220]
ATGAATTTCGAAAAAATTGAACAAGCTTATACCTATCTATTAGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGATGCCTTGATTGAGCAAAATGCCATGTATTTAGAGGGCAAGACAGATCTAGACATTGTCAAAAATAATAGCC
AAAAATTAAAAGAACTAGGTTTAAGTAAGGAAGAATGGCGCAGAGCCTACCAGTTCCTTTTTATGAAAGCTGCTCAAACA
GAGCCTTTGCAAGCAAATCACCAGTTCACCCCAGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCCAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGGACCGGAAATCTCGCTGAGACTATTGTCAACAATAGCCGTCTCA
AGATTGATTACTTAGGATTGGAAGTGGACGATCTCTTGATTGACCTATCTGCTAGTATCGCAGATGTGATGGAGTCTAGT
GTTGTCTTTGCACAAGGAGACGCTGTTCGTCCACAAGTTTTGAAAGAAAGTGACTTGATTGTTAGCGATTTACCAATTGG
TTATTATCCAGATGATGCCATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGGCATACTTATGCCCATCACCTTATGA
TGGAACAGGCGCTGAAATACTTGAAACCTCAAGGAGTGGCTATCTTTTTAGCTCCCAACAACCTCTTGACGAGTCCTCAG
AGTGATCTTTTAAAAGCTTGGTTGAAAGACAAGGCTCAAATCCTGGCCATGCTGACCTTGCCAGAATCTCTCTTTTCAAA
TCCAGCCTATGCTAAGACGATTTTCGTCCTACGAAAACAAGAAGAAGAATCTGTTCAGCCTTTTGTTTATCCTTTTACCG
ATCTCCAGGATCAAGACCAAGTGGTTCACTTCATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
ATGAATTTCGAAAAAATTGAACAAGCTTATACCTATCTATTAGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGATGCCTTGATTGAGCAAAATGCCATGTATTTAGAGGGCAAGACAGATCTAGACATTGTCAAAAATAATAGCC
AAAAATTAAAAGAACTAGGTTTAAGTAAGGAAGAATGGCGCAGAGCCTACCAGTTCCTTTTTATGAAAGCTGCTCAAACA
GAGCCTTTGCAAGCAAATCACCAGTTCACCCCAGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCCAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGGACCGGAAATCTCGCTGAGACTATTGTCAACAATAGCCGTCTCA
AGATTGATTACTTAGGATTGGAAGTGGACGATCTCTTGATTGACCTATCTGCTAGTATCGCAGATGTGATGGAGTCTAGT
GTTGTCTTTGCACAAGGAGACGCTGTTCGTCCACAAGTTTTGAAAGAAAGTGACTTGATTGTTAGCGATTTACCAATTGG
TTATTATCCAGATGATGCCATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGGCATACTTATGCCCATCACCTTATGA
TGGAACAGGCGCTGAAATACTTGAAACCTCAAGGAGTGGCTATCTTTTTAGCTCCCAACAACCTCTTGACGAGTCCTCAG
AGTGATCTTTTAAAAGCTTGGTTGAAAGACAAGGCTCAAATCCTGGCCATGCTGACCTTGCCAGAATCTCTCTTTTCAAA
TCCAGCCTATGCTAAGACGATTTTCGTCCTACGAAAACAAGAAGAAGAATCTGTTCAGCCTTTTGTTTATCCTTTTACCG
ATCTCCAGGATCAAGACCAAGTGGTTCACTTCATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
62.222 |
99.369 |
0.618 |
| comYH | Streptococcus mutans UA140 |
62.222 |
99.369 |
0.618 |