Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F6X00_RS05735 | Genome accession | NZ_CP044206 |
| Coordinates | 1225288..1225827 (+) | Length | 179 a.a. |
| NCBI ID | WP_011079389.1 | Uniprot ID | Q7MHB8 |
| Organism | Vibrio vulnificus strain Vv180806 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1220288..1230827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6X00_RS05720 (F6X00_05835) | uvrA | 1220318..1223140 (-) | 2823 | WP_011079386.1 | excinuclease ABC subunit UvrA | - |
| F6X00_RS05725 (F6X00_05840) | galU | 1223283..1224155 (-) | 873 | WP_011079387.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| F6X00_RS05730 (F6X00_05845) | qstR | 1224341..1224988 (-) | 648 | WP_011079388.1 | response regulator transcription factor | Regulator |
| F6X00_RS05735 (F6X00_05850) | ssb | 1225288..1225827 (+) | 540 | WP_011079389.1 | single-stranded DNA-binding protein | Machinery gene |
| F6X00_RS05740 (F6X00_05855) | csrD | 1225980..1227977 (+) | 1998 | WP_043877331.1 | RNase E specificity factor CsrD | - |
| F6X00_RS05745 (F6X00_05860) | - | 1227990..1229450 (+) | 1461 | WP_108679079.1 | MSHA biogenesis protein MshI | - |
| F6X00_RS05750 (F6X00_05865) | gspM | 1229447..1230097 (+) | 651 | WP_045596391.1 | type II secretion system protein GspM | - |
| F6X00_RS05755 (F6X00_05870) | - | 1230090..1230410 (+) | 321 | WP_011079393.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19794.97 Da Isoelectric Point: 5.2358
>NTDB_id=388748 F6X00_RS05735 WP_011079389.1 1225288..1225827(+) (ssb) [Vibrio vulnificus strain Vv180806]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=388748 F6X00_RS05735 WP_011079389.1 1225288..1225827(+) (ssb) [Vibrio vulnificus strain Vv180806]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCGGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCGGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.333 |
100 |
0.838 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.553 |
| ssb | Neisseria meningitidis MC58 |
46.237 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
100 |
0.48 |