Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HH306_RS03680 Genome accession   NZ_CP052759
Coordinates   769381..769878 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain LYT4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 764381..774878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS03665 bfr 764389..764853 (+) 465 WP_003093668.1 bacterioferritin -
  HH306_RS03670 uvrA 764925..767762 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  HH306_RS03675 - 767976..769364 (+) 1389 WP_003103910.1 MFS transporter -
  HH306_RS03680 ssb 769381..769878 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HH306_RS03685 pchA 769967..771397 (-) 1431 WP_049246608.1 isochorismate synthase PchA -
  HH306_RS03690 pchB 771394..771699 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  HH306_RS03695 pchC 771699..772454 (-) 756 WP_003106952.1 pyochelin biosynthesis editing thioesterase PchC -
  HH306_RS03700 pchD 772451..774094 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=388696 HH306_RS03680 WP_003114685.1 769381..769878(+) (ssb) [Pseudomonas aeruginosa strain LYT4]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=388696 HH306_RS03680 WP_003114685.1 769381..769878(+) (ssb) [Pseudomonas aeruginosa strain LYT4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515