Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   F4V31_RS01345 Genome accession   NZ_CP044162
Coordinates   277842..278429 (-) Length   195 a.a.
NCBI ID   WP_002927587.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272842..283429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS01325 - 273591..274355 (+) 765 WP_002851318.1 TIGR02757 family protein -
  F4V31_RS01330 - 274359..275122 (+) 764 Protein_257 TSUP family transporter -
  F4V31_RS01335 ctsF 275115..276296 (-) 1182 WP_002927586.1 type II secretion system F family protein Machinery gene
  F4V31_RS01340 ctsE 276293..277852 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  F4V31_RS01345 ctsX 277842..278429 (-) 588 WP_002927587.1 hypothetical protein Machinery gene
  F4V31_RS01350 ctsP 278433..279041 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  F4V31_RS01355 ctsD 279034..280446 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V31_RS01360 ctsR 280424..280735 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23375.43 Da        Isoelectric Point: 9.8409

>NTDB_id=388434 F4V31_RS01345 WP_002927587.1 277842..278429(-) (ctsX) [Campylobacter jejuni strain AR-0419]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRD
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDTYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=388434 F4V31_RS01345 WP_002927587.1 277842..278429(-) (ctsX) [Campylobacter jejuni strain AR-0419]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAC
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATACTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99

Multiple sequence alignment