Detailed information NTG0388436

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: F4V31_RS01355
• Genome accession: NZ_CP044162
• Coordinates: 279034..280446 (-)
• Length: 470 a.a.
• NCBI ID: WP_002856543.1
• Uniprot ID: A0A2R4CZP6
• Organism: Campylobacter jejuni strain AR-0419
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 274034..285446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V31_RS01330	-	274359..275122 (+)	764	Protein_257	TSUP family transporter	-
F4V31_RS01335	ctsF	275115..276296 (-)	1182	WP_002927586.1	type II secretion system F family protein	Machinery gene
F4V31_RS01340	ctsE	276293..277852 (-)	1560	WP_011812800.1	GspE/PulE family protein	Machinery gene
F4V31_RS01345	ctsX	277842..278429 (-)	588	WP_002927587.1	hypothetical protein	Machinery gene
F4V31_RS01350	ctsP	278433..279041 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
F4V31_RS01355	ctsD	279034..280446 (-)	1413	WP_002856543.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V31_RS01360	ctsR	280424..280735 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
F4V31_RS01365	nifJ	280759..284319 (-)	3561	WP_002886267.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
F4V31_RS01370	-	284417..285055 (-)	639	WP_002927588.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53094.65 Da
• Isoelectric Point: 6.6184

>NTDB_id=388436 F4V31_RS01355 WP_002856543.1 279034..280446(-) (ctsD) [Campylobacter jejuni strain AR-0419]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=388436 F4V31_RS01355 WP_002856543.1 279034..280446(-) (ctsD) [Campylobacter jejuni strain AR-0419]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

3D structure

• AlphaFold DB: A0A2R4CZP6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	100	100	1