Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V31_RS01360 Genome accession   NZ_CP044162
Coordinates   280424..280735 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain AR-0419     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275424..285735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS01340 ctsE 276293..277852 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  F4V31_RS01345 ctsX 277842..278429 (-) 588 WP_002927587.1 hypothetical protein Machinery gene
  F4V31_RS01350 ctsP 278433..279041 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  F4V31_RS01355 ctsD 279034..280446 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V31_RS01360 ctsR 280424..280735 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  F4V31_RS01365 nifJ 280759..284319 (-) 3561 WP_002886267.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V31_RS01370 - 284417..285055 (-) 639 WP_002927588.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=388437 F4V31_RS01360 WP_002855438.1 280424..280735(-) (ctsR) [Campylobacter jejuni strain AR-0419]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388437 F4V31_RS01360 WP_002855438.1 280424..280735(-) (ctsR) [Campylobacter jejuni strain AR-0419]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment