Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   F5K02_RS18145 Genome accession   NZ_CP044132
Coordinates   3647198..3647887 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642198..3652887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS18110 (F5K02_18275) - 3642395..3642877 (-) 483 WP_003151394.1 flagellar protein FlgN -
  F5K02_RS18115 (F5K02_18280) flgM 3642892..3643158 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  F5K02_RS18120 (F5K02_18285) - 3643228..3643647 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  F5K02_RS18125 (F5K02_18290) comFC 3643721..3644410 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  F5K02_RS18130 (F5K02_18295) - 3644416..3644700 (-) 285 WP_007407481.1 competence protein ComFB -
  F5K02_RS18135 (F5K02_18300) comFA 3644758..3646143 (-) 1386 WP_241457709.1 DEAD/DEAH box helicase Machinery gene
  F5K02_RS18140 (F5K02_18305) - 3646252..3647100 (-) 849 WP_007407483.1 DegV family protein -
  F5K02_RS18145 (F5K02_18310) degU 3647198..3647887 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F5K02_RS18150 (F5K02_18315) degS 3647964..3649127 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  F5K02_RS18155 (F5K02_18320) - 3649350..3649997 (+) 648 WP_003151384.1 YigZ family protein -
  F5K02_RS18160 (F5K02_18325) - 3650002..3651231 (+) 1230 WP_241457710.1 LCP family protein -
  F5K02_RS18165 (F5K02_18330) - 3651330..3652406 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=388125 F5K02_RS18145 WP_003219701.1 3647198..3647887(-) (degU) [Bacillus amyloliquefaciens strain ZKY01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=388125 F5K02_RS18145 WP_003219701.1 3647198..3647887(-) (degU) [Bacillus amyloliquefaciens strain ZKY01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment