Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   F5K02_RS18125 Genome accession   NZ_CP044132
Coordinates   3643721..3644410 (-) Length   229 a.a.
NCBI ID   WP_217898730.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638721..3649410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS18090 (F5K02_18255) fliW 3638812..3639243 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  F5K02_RS18095 (F5K02_18260) - 3639273..3639842 (-) 570 WP_007407476.1 DUF6470 family protein -
  F5K02_RS18100 (F5K02_18265) flgL 3639933..3640850 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  F5K02_RS18105 (F5K02_18270) flgK 3640862..3642379 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  F5K02_RS18110 (F5K02_18275) - 3642395..3642877 (-) 483 WP_003151394.1 flagellar protein FlgN -
  F5K02_RS18115 (F5K02_18280) flgM 3642892..3643158 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  F5K02_RS18120 (F5K02_18285) - 3643228..3643647 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  F5K02_RS18125 (F5K02_18290) comFC 3643721..3644410 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  F5K02_RS18130 (F5K02_18295) - 3644416..3644700 (-) 285 WP_007407481.1 competence protein ComFB -
  F5K02_RS18135 (F5K02_18300) comFA 3644758..3646143 (-) 1386 WP_241457709.1 DEAD/DEAH box helicase Machinery gene
  F5K02_RS18140 (F5K02_18305) - 3646252..3647100 (-) 849 WP_007407483.1 DegV family protein -
  F5K02_RS18145 (F5K02_18310) degU 3647198..3647887 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F5K02_RS18150 (F5K02_18315) degS 3647964..3649127 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25271.92 Da        Isoelectric Point: 8.2927

>NTDB_id=388123 F5K02_RS18125 WP_217898730.1 3643721..3644410(-) (comFC) [Bacillus amyloliquefaciens strain ZKY01]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=388123 F5K02_RS18125 WP_217898730.1 3643721..3644410(-) (comFC) [Bacillus amyloliquefaciens strain ZKY01]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment