Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   F5K02_RS18135 Genome accession   NZ_CP044132
Coordinates   3644758..3646143 (-) Length   461 a.a.
NCBI ID   WP_241457709.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639758..3651143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS18100 (F5K02_18265) flgL 3639933..3640850 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  F5K02_RS18105 (F5K02_18270) flgK 3640862..3642379 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  F5K02_RS18110 (F5K02_18275) - 3642395..3642877 (-) 483 WP_003151394.1 flagellar protein FlgN -
  F5K02_RS18115 (F5K02_18280) flgM 3642892..3643158 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  F5K02_RS18120 (F5K02_18285) - 3643228..3643647 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  F5K02_RS18125 (F5K02_18290) comFC 3643721..3644410 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  F5K02_RS18130 (F5K02_18295) - 3644416..3644700 (-) 285 WP_007407481.1 competence protein ComFB -
  F5K02_RS18135 (F5K02_18300) comFA 3644758..3646143 (-) 1386 WP_241457709.1 DEAD/DEAH box helicase Machinery gene
  F5K02_RS18140 (F5K02_18305) - 3646252..3647100 (-) 849 WP_007407483.1 DegV family protein -
  F5K02_RS18145 (F5K02_18310) degU 3647198..3647887 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F5K02_RS18150 (F5K02_18315) degS 3647964..3649127 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  F5K02_RS18155 (F5K02_18320) - 3649350..3649997 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52611.99 Da        Isoelectric Point: 10.2709

>NTDB_id=388124 F5K02_RS18135 WP_241457709.1 3644758..3646143(-) (comFA) [Bacillus amyloliquefaciens strain ZKY01]
MSESASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=388124 F5K02_RS18135 WP_241457709.1 3644758..3646143(-) (comFA) [Bacillus amyloliquefaciens strain ZKY01]
ATGTCCGAAAGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGATTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCTCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment