Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F5K02_RS13110 Genome accession   NZ_CP044132
Coordinates   2678642..2678977 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673642..2683977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS13090 (F5K02_13160) gcvT 2674248..2675348 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  F5K02_RS13095 (F5K02_13165) - 2675772..2677442 (+) 1671 WP_031378948.1 SNF2-related protein -
  F5K02_RS13100 (F5K02_13170) - 2677464..2678258 (+) 795 WP_007408330.1 YqhG family protein -
  F5K02_RS13105 (F5K02_13175) sinI 2678435..2678608 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  F5K02_RS13110 (F5K02_13180) sinR 2678642..2678977 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  F5K02_RS13115 (F5K02_13185) - 2679025..2679810 (-) 786 WP_007408329.1 TasA family protein -
  F5K02_RS13120 (F5K02_13190) - 2679875..2680459 (-) 585 WP_015240205.1 signal peptidase I -
  F5K02_RS13125 (F5K02_13195) tapA 2680431..2681102 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  F5K02_RS13130 (F5K02_13200) - 2681361..2681690 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  F5K02_RS13135 (F5K02_13205) - 2681730..2681909 (-) 180 WP_003153093.1 YqzE family protein -
  F5K02_RS13140 (F5K02_13210) comGG 2681966..2682343 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  F5K02_RS13145 (F5K02_13215) comGF 2682344..2682844 (-) 501 WP_254922226.1 competence type IV pilus minor pilin ComGF -
  F5K02_RS13150 (F5K02_13220) comGE 2682753..2683067 (-) 315 WP_094032244.1 competence type IV pilus minor pilin ComGE -
  F5K02_RS13155 (F5K02_13225) comGD 2683051..2683488 (-) 438 WP_094032243.1 competence type IV pilus minor pilin ComGD Machinery gene
  F5K02_RS13160 (F5K02_13230) comGC 2683478..2683786 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=388101 F5K02_RS13110 WP_003153104.1 2678642..2678977(+) (sinR) [Bacillus amyloliquefaciens strain ZKY01]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=388101 F5K02_RS13110 WP_003153104.1 2678642..2678977(+) (sinR) [Bacillus amyloliquefaciens strain ZKY01]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment