Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ30_RS16405 Genome accession   NZ_CP051765
Coordinates   3427414..3428019 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-113     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3422414..3433019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ30_RS16385 (HHJ30_16385) aes 3422555..3423514 (+) 960 WP_000801859.1 acetyl esterase -
  HHJ30_RS16390 (HHJ30_16390) hemH 3423511..3424473 (-) 963 WP_001250105.1 ferrochelatase -
  HHJ30_RS16395 (HHJ30_16395) adk 3424605..3425249 (-) 645 WP_001220233.1 adenylate kinase -
  HHJ30_RS16400 (HHJ30_16400) htpG 3425430..3427304 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ30_RS16405 (HHJ30_16405) recR 3427414..3428019 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ30_RS16410 (HHJ30_16410) ybaB 3428019..3428348 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ30_RS16415 (HHJ30_16415) dnaX 3428401..3430332 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HHJ30_RS16420 (HHJ30_16420) apt 3430461..3431012 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ30_RS16425 (HHJ30_16425) ybaN 3431165..3431542 (-) 378 WP_001188905.1 DUF454 family protein -
  HHJ30_RS16430 (HHJ30_16430) priC 3431612..3432139 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HHJ30_RS16435 (HHJ30_16435) rsmS 3432153..3432314 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ30_RS23035 - 3432367..3432465 (-) 99 Protein_3243 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=388102 HHJ30_RS16405 WP_001195025.1 3427414..3428019(-) (recR) [Escherichia coli strain SCU-113]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388102 HHJ30_RS16405 WP_001195025.1 3427414..3428019(-) (recR) [Escherichia coli strain SCU-113]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment