Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BATR1942_RS17735 Genome accession   NC_014639
Coordinates   3612101..3612616 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3607101..3617616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS17705 (BATR1942_18495) - 3607425..3607991 (-) 567 WP_003326064.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  BATR1942_RS17710 (BATR1942_18500) - 3608110..3608868 (-) 759 WP_003326063.1 exodeoxyribonuclease III -
  BATR1942_RS17715 (BATR1942_18505) - 3609065..3609985 (+) 921 WP_003326062.1 DMT family transporter -
  BATR1942_RS17720 (BATR1942_18510) - 3610077..3610745 (+) 669 WP_003326061.1 GntR family transcriptional regulator -
  BATR1942_RS17725 (BATR1942_18515) - 3610848..3611687 (-) 840 WP_034718196.1 MBL fold metallo-hydrolase -
  BATR1942_RS17730 (BATR1942_18520) rpsR 3611818..3612057 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  BATR1942_RS17735 (BATR1942_18525) ssbA 3612101..3612616 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  BATR1942_RS17740 (BATR1942_18530) rpsF 3612656..3612943 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  BATR1942_RS17745 (BATR1942_18535) ychF 3613056..3614156 (-) 1101 WP_003326055.1 redox-regulated ATPase YchF -
  BATR1942_RS17750 (BATR1942_18540) - 3614283..3616286 (-) 2004 WP_013390719.1 molybdopterin-dependent oxidoreductase -
  BATR1942_RS17755 (BATR1942_18545) - 3616336..3616542 (-) 207 WP_003326053.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=38808 BATR1942_RS17735 WP_003326057.1 3612101..3612616(-) (ssbA) [Bacillus atrophaeus 1942]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=38808 BATR1942_RS17735 WP_003326057.1 3612101..3612616(-) (ssbA) [Bacillus atrophaeus 1942]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAAGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTCAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392

Multiple sequence alignment