Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   F5K02_RS01810 Genome accession   NZ_CP044132
Coordinates   371095..371493 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366095..376493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS01785 (F5K02_01800) - 366267..367469 (+) 1203 WP_064107758.1 GTP-binding protein -
  F5K02_RS01790 (F5K02_01805) - 367534..368670 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  F5K02_RS01795 (F5K02_01810) - 368685..369119 (+) 435 WP_007409358.1 RDD family protein -
  F5K02_RS01800 (F5K02_01815) - 369191..369514 (+) 324 WP_007409357.1 YckD family protein -
  F5K02_RS01805 (F5K02_01820) - 369618..371054 (+) 1437 WP_241457875.1 family 1 glycosylhydrolase -
  F5K02_RS01810 (F5K02_01825) nin/comJ 371095..371493 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  F5K02_RS01815 (F5K02_01830) nucA/comI 371514..371951 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F5K02_RS01820 (F5K02_01835) hxlB 372309..372866 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  F5K02_RS01825 (F5K02_01840) hxlA 372863..373498 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  F5K02_RS01830 (F5K02_01845) - 373730..374092 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=388067 F5K02_RS01810 WP_039252825.1 371095..371493(-) (nin/comJ) [Bacillus amyloliquefaciens strain ZKY01]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=388067 F5K02_RS01810 WP_039252825.1 371095..371493(-) (nin/comJ) [Bacillus amyloliquefaciens strain ZKY01]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment