Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMBM01240149_RS01100 Genome accession   NC_017514
Coordinates   219507..220475 (-) Length   322 a.a.
NCBI ID   WP_014580913.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 214507..225475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS11875 - 216326..216538 (-) 213 WP_078835863.1 hypothetical protein -
  NMBM01240149_RS01080 (NMBM01240149_0192) - 216633..216971 (+) 339 WP_002214902.1 P-II family nitrogen regulator -
  NMBM01240149_RS01085 (NMBM01240149_0193) - 217030..217788 (-) 759 WP_002240816.1 ABC transporter ATP-binding protein -
  NMBM01240149_RS01090 (NMBM01240149_0194) - 217872..218498 (-) 627 WP_014580911.1 FmdE family protein -
  NMBM01240149_RS01095 (NMBM01240149_0195) - 218543..219517 (-) 975 WP_014580912.1 iron chelate uptake ABC transporter family permease subunit -
  NMBM01240149_RS01100 (NMBM01240149_0196) ceuB 219507..220475 (-) 969 WP_014580913.1 ABC transporter permease Machinery gene
  NMBM01240149_RS01105 - 220510..220686 (-) 177 WP_162051242.1 hypothetical protein -
  NMBM01240149_RS01110 (NMBM01240149_0197) - 220704..221669 (-) 966 WP_014580914.1 siderophore ABC transporter substrate-binding protein -
  NMBM01240149_RS01115 (NMBM01240149_0198) fetA 221973..224117 (-) 2145 WP_002224138.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34413.68 Da        Isoelectric Point: 10.0891

>NTDB_id=38801 NMBM01240149_RS01100 WP_014580913.1 219507..220475(-) (ceuB) [Neisseria meningitidis M01-240149]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=38801 NMBM01240149_RS01100 WP_014580913.1 219507..220475(-) (ceuB) [Neisseria meningitidis M01-240149]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCCACCTTTATTGCGTAT
GAAAACGAAATGCTGCAAATGCTGGGCGTGTGGCAACAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTATCGACCGTCTTCGGCGTATTGGGTACGGCGTTGTTTTTATGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment