Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BATR1942_RS14975 Genome accession   NC_014639
Coordinates   3060023..3061420 (-) Length   465 a.a.
NCBI ID   WP_003326717.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055023..3066420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS14940 (BATR1942_15595) flgL 3055207..3056103 (-) 897 WP_003326725.1 flagellar hook-associated protein FlgL -
  BATR1942_RS14945 (BATR1942_15600) flgK 3056115..3057638 (-) 1524 WP_003326724.1 flagellar hook-associated protein FlgK -
  BATR1942_RS14950 (BATR1942_15605) - 3057655..3058137 (-) 483 WP_003326723.1 flagellar protein FlgN -
  BATR1942_RS14955 (BATR1942_15610) flgM 3058153..3058413 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  BATR1942_RS14960 (BATR1942_15615) - 3058493..3058912 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  BATR1942_RS14965 (BATR1942_15620) comFC 3058984..3059706 (-) 723 WP_034717733.1 amidophosphoribosyltransferase Machinery gene
  BATR1942_RS14970 (BATR1942_15625) - 3059670..3059966 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  BATR1942_RS14975 (BATR1942_15630) comFA 3060023..3061420 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  BATR1942_RS14980 (BATR1942_15635) - 3061527..3062369 (-) 843 WP_003326716.1 DegV family protein -
  BATR1942_RS14985 (BATR1942_15640) degU 3062476..3063165 (-) 690 WP_003326715.1 two-component system response regulator DegU Regulator
  BATR1942_RS14990 (BATR1942_15645) degS 3063242..3064405 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  BATR1942_RS14995 (BATR1942_15650) - 3064623..3065276 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53243.85 Da        Isoelectric Point: 10.0443

>NTDB_id=38799 BATR1942_RS14975 WP_003326717.1 3060023..3061420(-) (comFA) [Bacillus atrophaeus 1942]
MQTELEKKPLFSADLQQFLHHRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLARSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTIPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=38799 BATR1942_RS14975 WP_003326717.1 3060023..3061420(-) (comFA) [Bacillus atrophaeus 1942]
ATGCAGACTGAGTTGGAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCACCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCAGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTATTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.774

100

0.768

Multiple sequence alignment