Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BATR1942_RS14965 Genome accession   NC_014639
Coordinates   3058984..3059706 (-) Length   240 a.a.
NCBI ID   WP_034717733.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3053984..3064706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS14930 (BATR1942_15585) fliW 3054127..3054558 (-) 432 WP_003326727.1 flagellar assembly protein FliW -
  BATR1942_RS14935 (BATR1942_15590) - 3054593..3055159 (-) 567 WP_003326726.1 DUF6470 family protein -
  BATR1942_RS14940 (BATR1942_15595) flgL 3055207..3056103 (-) 897 WP_003326725.1 flagellar hook-associated protein FlgL -
  BATR1942_RS14945 (BATR1942_15600) flgK 3056115..3057638 (-) 1524 WP_003326724.1 flagellar hook-associated protein FlgK -
  BATR1942_RS14950 (BATR1942_15605) - 3057655..3058137 (-) 483 WP_003326723.1 flagellar protein FlgN -
  BATR1942_RS14955 (BATR1942_15610) flgM 3058153..3058413 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  BATR1942_RS14960 (BATR1942_15615) - 3058493..3058912 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  BATR1942_RS14965 (BATR1942_15620) comFC 3058984..3059706 (-) 723 WP_034717733.1 amidophosphoribosyltransferase Machinery gene
  BATR1942_RS14970 (BATR1942_15625) - 3059670..3059966 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  BATR1942_RS14975 (BATR1942_15630) comFA 3060023..3061420 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  BATR1942_RS14980 (BATR1942_15635) - 3061527..3062369 (-) 843 WP_003326716.1 DegV family protein -
  BATR1942_RS14985 (BATR1942_15640) degU 3062476..3063165 (-) 690 WP_003326715.1 two-component system response regulator DegU Regulator
  BATR1942_RS14990 (BATR1942_15645) degS 3063242..3064405 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27565.76 Da        Isoelectric Point: 8.5575

>NTDB_id=38798 BATR1942_RS14965 WP_034717733.1 3058984..3059706(-) (comFC) [Bacillus atrophaeus 1942]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKKQLQRIAGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYLYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTAYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
GRPIIHSLTRLDNEKQSKKNKAERLLFKRVFNTEINSVEDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=38798 BATR1942_RS14965 WP_034717733.1 3058984..3059706(-) (comFC) [Bacillus atrophaeus 1942]
TTGTGTGACGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAAACAATTACAAAGGATCGCAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATTTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGTATCGGAATTTTCAACTGCCTATCCTGAAAAAAGCTATG
TGCTCATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTA
GGCCGGCCCATCATTCATTCCCTAACCCGTCTGGATAATGAAAAACAATCCAAGAAAAACAAAGCAGAACGGCTCCTTTT
CAAACGTGTTTTTAATACTGAAATCAATTCCGTTGAAGATATGGATGTCATATTAATCGACGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTGGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

65.417

100

0.654

Multiple sequence alignment