Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BATR1942_RS14985 Genome accession   NC_014639
Coordinates   3062476..3063165 (-) Length   229 a.a.
NCBI ID   WP_003326715.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057476..3068165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS14950 (BATR1942_15605) - 3057655..3058137 (-) 483 WP_003326723.1 flagellar protein FlgN -
  BATR1942_RS14955 (BATR1942_15610) flgM 3058153..3058413 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  BATR1942_RS14960 (BATR1942_15615) - 3058493..3058912 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  BATR1942_RS14965 (BATR1942_15620) comFC 3058984..3059706 (-) 723 WP_034717733.1 amidophosphoribosyltransferase Machinery gene
  BATR1942_RS14970 (BATR1942_15625) - 3059670..3059966 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  BATR1942_RS14975 (BATR1942_15630) comFA 3060023..3061420 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  BATR1942_RS14980 (BATR1942_15635) - 3061527..3062369 (-) 843 WP_003326716.1 DegV family protein -
  BATR1942_RS14985 (BATR1942_15640) degU 3062476..3063165 (-) 690 WP_003326715.1 two-component system response regulator DegU Regulator
  BATR1942_RS14990 (BATR1942_15645) degS 3063242..3064405 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  BATR1942_RS14995 (BATR1942_15650) - 3064623..3065276 (+) 654 WP_003326713.1 YigZ family protein -
  BATR1942_RS15000 (BATR1942_15655) - 3065276..3066532 (+) 1257 WP_003326712.1 LCP family protein -
  BATR1942_RS15005 (BATR1942_15660) - 3066622..3067698 (-) 1077 WP_003326711.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25867.51 Da        Isoelectric Point: 5.5393

>NTDB_id=38800 BATR1942_RS14985 WP_003326715.1 3062476..3063165(-) (degU) [Bacillus atrophaeus 1942]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=38800 BATR1942_RS14985 WP_003326715.1 3062476..3063165(-) (degU) [Bacillus atrophaeus 1942]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCGAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTCGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment