Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOB68_RS09870 Genome accession   NZ_CP044106
Coordinates   1897529..1898032 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain FDAARGOS_660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1892529..1903032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB68_RS09830 (FOB68_09835) - 1892569..1892832 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  FOB68_RS09835 (FOB68_09840) - 1892970..1893542 (-) 573 WP_000769719.1 PepSY domain-containing protein -
  FOB68_RS09840 (FOB68_09845) - 1893723..1894091 (-) 369 WP_000849172.1 YxeA family protein -
  FOB68_RS09845 (FOB68_09850) selX 1894460..1895071 (-) 612 WP_000473142.1 staphylococcal enterotoxin-like toxin X -
  FOB68_RS14530 - 1895277..1895992 (+) 716 Protein_1827 tyrosine-type recombinase/integrase -
  FOB68_RS09860 (FOB68_09865) - 1896031..1896969 (+) 939 WP_078055966.1 Abi family protein -
  FOB68_RS09865 (FOB68_09870) rpsR 1897235..1897477 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  FOB68_RS09870 (FOB68_09875) ssbA 1897529..1898032 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  FOB68_RS09875 (FOB68_09880) rpsF 1898053..1898349 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  FOB68_RS09880 (FOB68_09885) - 1898593..1898757 (+) 165 WP_001052486.1 hypothetical protein -
  FOB68_RS09885 (FOB68_09890) istB 1898813..1899574 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  FOB68_RS09890 (FOB68_09895) istA 1899567..1900859 (-) 1293 WP_000777467.1 IS21 family transposase -
  FOB68_RS09895 (FOB68_09900) ychF 1901075..1902172 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  FOB68_RS09900 (FOB68_09905) - 1902184..1902387 (-) 204 WP_000157348.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=387936 FOB68_RS09870 WP_000934799.1 1897529..1898032(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_660]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=387936 FOB68_RS09870 WP_000934799.1 1897529..1898032(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_660]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment