Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FOB24_RS03345 | Genome accession | NZ_CP044101 |
| Coordinates | 555664..556188 (+) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter werkmanii strain FDAARGOS_616 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 550664..561188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB24_RS03325 (FOB24_03325) | aphA | 551308..552021 (+) | 714 | WP_038636269.1 | acid phosphatase AphA | - |
| FOB24_RS03330 (FOB24_03330) | - | 552148..552504 (+) | 357 | WP_038636271.1 | MmcQ/YjbR family DNA-binding protein | - |
| FOB24_RS03335 (FOB24_03335) | uvrA | 552590..555412 (-) | 2823 | WP_038636273.1 | excinuclease ABC subunit UvrA | - |
| FOB24_RS03345 (FOB24_03345) | ssb | 555664..556188 (+) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| FOB24_RS03350 (FOB24_03350) | - | 556254..556535 (-) | 282 | WP_038636276.1 | YjcB family protein | - |
| FOB24_RS03355 (FOB24_03355) | - | 557087..558673 (+) | 1587 | WP_038636279.1 | EAL domain-containing protein | - |
| FOB24_RS03360 (FOB24_03360) | soxS | 558676..558999 (-) | 324 | WP_005132611.1 | superoxide response transcriptional regulator SoxS | - |
| FOB24_RS03365 (FOB24_03365) | soxR | 559086..559544 (+) | 459 | WP_003826630.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=387826 FOB24_RS03345 WP_003826621.1 555664..556188(+) (ssb) [Citrobacter werkmanii strain FDAARGOS_616]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=387826 FOB24_RS03345 WP_003826621.1 555664..556188(+) (ssb) [Citrobacter werkmanii strain FDAARGOS_616]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTTGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTTGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |