Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FOB45_RS21030 Genome accession   NZ_CP044086
Coordinates   2948620..2949960 (+) Length   446 a.a.
NCBI ID   WP_150347966.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943620..2954960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS21005 (FOB45_21005) pgeF 2943713..2944456 (-) 744 WP_150347961.1 peptidoglycan editing factor PgeF -
  FOB45_RS21010 (FOB45_21010) rluD 2944453..2945415 (-) 963 WP_150347962.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FOB45_RS21015 (FOB45_21015) - 2945573..2946586 (+) 1014 WP_150347963.1 outer membrane protein assembly factor BamD -
  FOB45_RS28655 (FOB45_21020) - 2946805..2947044 (+) 240 WP_150347964.1 PP0621 family protein -
  FOB45_RS21025 (FOB45_21025) pilS 2947034..2948617 (+) 1584 WP_150347965.1 ATP-binding protein Regulator
  FOB45_RS21030 (FOB45_21030) pilR 2948620..2949960 (+) 1341 WP_150347966.1 sigma-54 dependent transcriptional regulator Regulator
  FOB45_RS21035 (FOB45_21035) - 2949979..2951067 (-) 1089 WP_150347967.1 FAD-dependent oxidoreductase -
  FOB45_RS21040 (FOB45_21040) - 2951111..2951548 (-) 438 WP_026004135.1 type IV pilin protein -
  FOB45_RS21045 (FOB45_21045) - 2951530..2954751 (-) 3222 WP_150347968.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49770.22 Da        Isoelectric Point: 6.2054

>NTDB_id=387572 FOB45_RS21030 WP_150347966.1 2948620..2949960(+) (pilR) [Pseudomonas luteola strain FDAARGOS_637]
MNRQKVLIVDDEPDIRELLEITLGRMKLDTFSAKNVKDAKDLLARESFDLCLTDMRLPDGSGLDLVQYIQQKYPNVPVAM
ITAFGSLDTAIQALKAGAFDYLTKPVDLPRLRELVSTALRLSSSAPAPIKVADHRLLGDSPPMRTLRAQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRADRPFIPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PVAMQVKLLRAIQEKAVRPVGGQQEVALDVRILSATHKDLAAEVAADRFRQDLFYRLNVIELRVPPLRERREDIAELCST
ILKRLAKESQQDLAQLTDDALAKLKSYRFPGNVRELENMLERAYTLCEDNLIKPSDLRLADTPQSSSTGETSLANISNLE
DYLEEIERKLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=387572 FOB45_RS21030 WP_150347966.1 2948620..2949960(+) (pilR) [Pseudomonas luteola strain FDAARGOS_637]
ATGAATCGACAGAAAGTCCTGATCGTTGATGACGAACCCGATATCCGAGAGCTGTTAGAAATTACATTGGGTCGCATGAA
GCTCGACACCTTTAGCGCAAAGAACGTGAAAGACGCAAAGGATCTGCTGGCTCGAGAATCCTTTGACTTGTGTCTGACCG
ACATGCGTCTTCCAGATGGCTCCGGTCTTGATCTTGTGCAATACATCCAGCAGAAATATCCAAATGTTCCTGTAGCCATG
ATTACCGCTTTTGGAAGTCTGGATACGGCCATCCAGGCATTGAAAGCCGGCGCCTTCGATTACCTGACCAAACCTGTTGA
TCTTCCTCGGCTCCGGGAGCTTGTAAGCACCGCCTTACGCCTGAGCAGCTCAGCGCCTGCCCCCATCAAGGTGGCAGATC
ACAGGCTGCTGGGTGACTCACCGCCCATGCGTACGCTACGGGCCCAGATCGGCAAACTCGCTCGCAGCCAGGCGCCCGTC
TATATCAGCGGTGAGTCCGGCAGCGGTAAAGAGTTGGTCGCCCGACTGATTCACGAGCAAGGCCCTCGTGCGGATCGCCC
CTTTATTCCGGTCAACTGTGGCGCCATTCCATCGGAGCTGATGGAAAGCGAGTTTTTTGGCCACAAAAAAGGCAGCTTTA
CGGGTGCCATTGAAGACAAGCAGGGCCTATTCCAAGCCGCCCAGGGCGGTACTTTATTTCTGGATGAAGTCGCCGATCTG
CCGGTAGCCATGCAGGTAAAACTGCTTCGTGCCATTCAGGAAAAGGCTGTACGCCCCGTCGGCGGGCAGCAGGAAGTAGC
GCTGGATGTACGGATACTAAGTGCCACACATAAAGATCTGGCCGCCGAAGTAGCCGCTGATCGCTTCCGGCAAGACTTGT
TTTATCGCCTCAACGTCATCGAACTTCGTGTCCCTCCGCTACGTGAACGACGCGAAGACATTGCGGAACTGTGCTCGACT
ATCCTGAAGCGTCTCGCCAAGGAATCACAGCAGGATCTGGCCCAGCTGACAGATGATGCTCTCGCCAAACTCAAGAGCTA
TCGCTTTCCGGGTAATGTTCGCGAGTTGGAGAACATGCTTGAGCGAGCCTATACCCTTTGTGAAGATAACTTGATCAAAC
CAAGCGATTTGCGCCTTGCAGATACCCCCCAGTCGTCCAGCACTGGCGAAACCAGTCTGGCCAATATCAGTAATCTTGAG
GATTACCTGGAAGAGATCGAGCGAAAGCTGATCATGCAGGCGCTTGAGGAGACGCGCTGGAACCGTACAGCTGCCGCTGA
ACGGCTCGGGCTTTCCTTCCGCTCGATGCGGTATCGCCTGAAAAAGTTGGGAATTGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.036

100

0.834
  pilR Acinetobacter baumannii strain A118

50.763

100

0.522
  luxO Vibrio cholerae strain A1552

37.33

99.103

0.37

Multiple sequence alignment