Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FOB45_RS21025 Genome accession   NZ_CP044086
Coordinates   2947034..2948617 (+) Length   527 a.a.
NCBI ID   WP_150347965.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2942034..2953617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS21005 (FOB45_21005) pgeF 2943713..2944456 (-) 744 WP_150347961.1 peptidoglycan editing factor PgeF -
  FOB45_RS21010 (FOB45_21010) rluD 2944453..2945415 (-) 963 WP_150347962.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FOB45_RS21015 (FOB45_21015) - 2945573..2946586 (+) 1014 WP_150347963.1 outer membrane protein assembly factor BamD -
  FOB45_RS28655 (FOB45_21020) - 2946805..2947044 (+) 240 WP_150347964.1 PP0621 family protein -
  FOB45_RS21025 (FOB45_21025) pilS 2947034..2948617 (+) 1584 WP_150347965.1 ATP-binding protein Regulator
  FOB45_RS21030 (FOB45_21030) pilR 2948620..2949960 (+) 1341 WP_150347966.1 sigma-54 dependent transcriptional regulator Regulator
  FOB45_RS21035 (FOB45_21035) - 2949979..2951067 (-) 1089 WP_150347967.1 FAD-dependent oxidoreductase -
  FOB45_RS21040 (FOB45_21040) - 2951111..2951548 (-) 438 WP_026004135.1 type IV pilin protein -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 58996.03 Da        Isoelectric Point: 7.1348

>NTDB_id=387571 FOB45_RS21025 WP_150347965.1 2947034..2948617(+) (pilS) [Pseudomonas luteola strain FDAARGOS_637]
MSADFFHYNLQDSRILRLYHYYRVIVGLVFILLVSTNLDDNLLKVTEGKNFVVGSWIYLAGNILAIFLPPLRKQKQIFAL
ALVDIGLLTYLMYSAGGTPSGIGNLIIITVSIANILLVGRIGILLAALATLALIYATAYRTLSLPSEANQYVQAGGLGAL
CFAAAFLVQSLVSRLSKSQTLAEERAHVVADLENLNALILDRMRTGILVLDSRMAPILANPAARELLGHPELDTGELNDQ
CPELMDRLQQWERNRTLRPAPMQAFSEGPLIQPSFVPIQRSGNQHILIFLENISRIAQQAQQLKLASLGRLTAGIAHEIR
NPLGAISHAAQLLQESEVLDQHDLRLAQIIQDHSRRMNIIIENVLQLSRRRQAEPQLLDLKYWVHRFAGEFRTTLREQQF
VYVQTTSGTIQTRMDPSQLTQVLTNLVQNGLRHSSKLHGKGQVWLDLFRDPDSDLPILDVIDDGPGVPEDQITNLFEPFF
TTESKGTGLGLYISRELCESNQARLDYRQQEQGGCFRITFAHPRKLS

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=387571 FOB45_RS21025 WP_150347965.1 2947034..2948617(+) (pilS) [Pseudomonas luteola strain FDAARGOS_637]
GTGAGCGCTGATTTTTTTCATTACAACCTGCAGGACAGTCGCATCCTGAGGTTGTATCACTACTACCGGGTCATTGTCGG
GCTGGTTTTTATCCTTCTGGTTTCCACCAACCTGGACGACAACCTTCTGAAGGTAACCGAGGGTAAAAACTTTGTGGTCG
GCAGCTGGATTTACCTGGCGGGTAATATCCTGGCGATTTTTCTGCCACCACTGCGCAAGCAAAAACAGATCTTTGCCCTA
GCGCTAGTGGATATCGGGCTGCTGACCTATCTCATGTACAGCGCTGGCGGTACACCGAGTGGTATTGGCAACCTCATCAT
CATTACCGTATCGATCGCCAACATTCTTCTCGTTGGGCGTATTGGAATTCTGCTGGCGGCCTTGGCTACCCTTGCCCTCA
TTTATGCCACCGCCTATAGAACGCTTAGCCTTCCCTCAGAGGCCAATCAGTATGTTCAGGCGGGAGGCCTGGGCGCACTG
TGCTTTGCCGCCGCATTTCTGGTGCAAAGTCTCGTTAGTCGGCTGTCCAAAAGCCAGACCCTGGCAGAAGAGCGGGCGCA
CGTTGTTGCCGATCTGGAAAATCTGAATGCGCTGATCCTGGACCGTATGCGCACCGGCATTCTGGTTCTGGACTCAAGAA
TGGCACCTATTCTAGCCAACCCTGCCGCTCGAGAGCTGCTCGGTCATCCAGAACTCGATACCGGGGAGTTGAATGATCAA
TGCCCCGAATTGATGGACCGGCTACAACAGTGGGAAAGGAACCGGACGCTTCGTCCTGCACCCATGCAAGCGTTCAGCGA
AGGCCCACTGATCCAGCCCAGCTTCGTCCCCATCCAACGGAGCGGCAATCAGCATATTCTGATTTTTCTGGAAAACATTT
CCCGTATTGCTCAGCAGGCCCAGCAGCTAAAGCTTGCATCATTGGGACGCCTCACGGCGGGCATTGCCCATGAAATTCGC
AACCCGCTGGGGGCCATAAGCCACGCGGCACAGCTTCTTCAGGAATCAGAAGTACTCGATCAGCATGATCTTCGCCTGGC
CCAGATCATTCAGGATCACTCCCGGCGCATGAACATCATCATCGAGAATGTCCTGCAACTTTCCAGGCGCCGCCAGGCAG
AGCCCCAGCTGCTGGACCTCAAATACTGGGTGCACCGCTTTGCGGGTGAATTCAGAACCACTCTACGTGAGCAACAGTTT
GTCTATGTGCAAACGACATCAGGTACGATACAGACCCGCATGGACCCTAGCCAGCTGACTCAGGTGCTAACCAACCTCGT
TCAAAATGGCCTACGCCATAGCAGCAAGCTGCACGGCAAGGGACAAGTGTGGCTGGATCTCTTCCGTGACCCCGACTCAG
ACCTTCCCATATTGGATGTCATTGATGATGGGCCAGGTGTACCTGAAGACCAGATCACCAACCTTTTCGAACCCTTCTTT
ACCACCGAAAGCAAAGGAACCGGGCTCGGCCTCTATATTTCCCGCGAATTATGCGAGAGTAACCAGGCCCGCCTCGACTA
CCGCCAGCAGGAACAAGGCGGCTGCTTCCGCATTACCTTTGCCCATCCGCGCAAGTTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-520)

His Kinase A (phospho-acceptor) domain (HisKA)

(307-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.969

98.482

0.63

Multiple sequence alignment