Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHJ28_RS20880 Genome accession   NZ_CP051727
Coordinates   4386088..4386624 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain SCU-111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4381088..4391624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ28_RS20860 (HHJ28_20860) soxR 4382817..4383281 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HHJ28_RS20865 (HHJ28_20865) soxS 4383367..4383690 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HHJ28_RS20870 (HHJ28_20870) pdeC 4383693..4385279 (-) 1587 WP_001765301.1 c-di-GMP phosphodiesterase PdeC -
  HHJ28_RS20875 (HHJ28_20875) yjcB 4385708..4385989 (+) 282 WP_001296643.1 YjcB family protein -
  HHJ28_RS20880 (HHJ28_20880) ssb 4386088..4386624 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HHJ28_RS20885 (HHJ28_20885) uvrA 4386879..4389701 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  HHJ28_RS20890 (HHJ28_20890) yjbR 4389736..4390092 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HHJ28_RS20895 (HHJ28_20895) yjbQ 4390096..4390512 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HHJ28_RS20900 (HHJ28_20900) aphA 4390623..4391336 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=387531 HHJ28_RS20880 WP_000168305.1 4386088..4386624(-) (ssb) [Escherichia coli strain SCU-111]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=387531 HHJ28_RS20880 WP_000168305.1 4386088..4386624(-) (ssb) [Escherichia coli strain SCU-111]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489