Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FOB51_RS18395 | Genome accession | NZ_CP044081 |
| Coordinates | 2957947..2958435 (+) | Length | 162 a.a. |
| NCBI ID | WP_099647955.1 | Uniprot ID | - |
| Organism | Paracoccus yeei strain FDAARGOS_643 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2957086..2989913 | 2957947..2958435 | within | 0 |
Gene organization within MGE regions
Location: 2957086..2989913
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB51_RS18390 (FOB51_18390) | - | 2957086..2957724 (-) | 639 | WP_099647954.1 | lytic transglycosylase domain-containing protein | - |
| FOB51_RS18395 (FOB51_18395) | ssb | 2957947..2958435 (+) | 489 | WP_099647955.1 | single-stranded DNA-binding protein | Machinery gene |
| FOB51_RS24130 (FOB51_18400) | - | 2958742..2958882 (+) | 141 | WP_397294622.1 | Arm DNA-binding domain-containing protein | - |
| FOB51_RS18405 (FOB51_18405) | - | 2958930..2960164 (+) | 1235 | WP_397294030.1 | IS3 family transposase | - |
| FOB51_RS18410 (FOB51_18410) | - | 2960257..2960562 (+) | 306 | WP_150351428.1 | hypothetical protein | - |
| FOB51_RS18415 (FOB51_18415) | - | 2960734..2961255 (+) | 522 | WP_150351429.1 | thermonuclease family protein | - |
| FOB51_RS18425 (FOB51_18425) | tig | 2961956..2963290 (+) | 1335 | WP_028719826.1 | trigger factor | - |
| FOB51_RS18430 (FOB51_18430) | - | 2963659..2964534 (+) | 876 | WP_028719825.1 | hypothetical protein | - |
| FOB51_RS18435 (FOB51_18435) | - | 2964572..2964823 (-) | 252 | WP_028719824.1 | DUF2312 domain-containing protein | - |
| FOB51_RS18440 (FOB51_18440) | - | 2964912..2965139 (+) | 228 | WP_190941406.1 | hypothetical protein | - |
| FOB51_RS18445 (FOB51_18445) | dtd | 2965143..2965592 (+) | 450 | WP_150351430.1 | D-aminoacyl-tRNA deacylase | - |
| FOB51_RS18450 (FOB51_18450) | - | 2965824..2967260 (+) | 1437 | WP_150351431.1 | DEAD/DEAH box helicase | - |
| FOB51_RS18455 (FOB51_18455) | - | 2967330..2967908 (+) | 579 | WP_080622775.1 | thymidine kinase | - |
| FOB51_RS18460 (FOB51_18460) | - | 2967905..2969149 (+) | 1245 | WP_150351432.1 | cytochrome b/b6 domain-containing protein | - |
| FOB51_RS18465 (FOB51_18465) | - | 2969146..2971803 (-) | 2658 | WP_150351433.1 | calcium-binding protein | - |
| FOB51_RS18470 (FOB51_18470) | cueR | 2972447..2972881 (-) | 435 | WP_112888181.1 | Cu(I)-responsive transcriptional regulator | - |
| FOB51_RS18475 (FOB51_18475) | - | 2972878..2975349 (-) | 2472 | WP_150351434.1 | heavy metal translocating P-type ATPase | - |
| FOB51_RS18480 (FOB51_18480) | - | 2975355..2975747 (-) | 393 | WP_150351435.1 | DUF305 domain-containing protein | - |
| FOB51_RS18485 (FOB51_18485) | - | 2975757..2975951 (-) | 195 | WP_028719400.1 | heavy-metal-associated domain-containing protein | - |
| FOB51_RS18490 (FOB51_18490) | - | 2976066..2976890 (-) | 825 | WP_150351436.1 | proline/glycine betaine ABC transporter permease | - |
| FOB51_RS18495 (FOB51_18495) | - | 2976887..2977714 (-) | 828 | WP_150351437.1 | proline/glycine betaine ABC transporter permease | - |
| FOB51_RS18500 (FOB51_18500) | - | 2977726..2978787 (-) | 1062 | WP_028719403.1 | glycine betaine/L-proline ABC transporter ATP-binding protein | - |
| FOB51_RS18505 (FOB51_18505) | - | 2978856..2979707 (-) | 852 | WP_150351438.1 | glycine betaine ABC transporter substrate-binding protein | - |
| FOB51_RS18510 (FOB51_18510) | - | 2980007..2980984 (-) | 978 | WP_223850286.1 | LysR substrate-binding domain-containing protein | - |
| FOB51_RS18515 (FOB51_18515) | - | 2980981..2982327 (-) | 1347 | WP_150351439.1 | FAD-binding oxidoreductase | - |
| FOB51_RS18520 (FOB51_18520) | - | 2982327..2983832 (-) | 1506 | WP_150351440.1 | aldehyde dehydrogenase | - |
| FOB51_RS18525 (FOB51_18525) | - | 2983834..2984751 (-) | 918 | WP_397294634.1 | dihydrodipicolinate synthase family protein | - |
| FOB51_RS18530 (FOB51_18530) | rpmG | 2984996..2985163 (-) | 168 | WP_028719409.1 | 50S ribosomal protein L33 | - |
| FOB51_RS18535 (FOB51_18535) | - | 2985298..2985681 (-) | 384 | WP_051578114.1 | SH3 domain-containing protein | - |
| FOB51_RS18545 (FOB51_18545) | - | 2986256..2986585 (-) | 330 | WP_099650069.1 | helix-turn-helix domain-containing protein | - |
| FOB51_RS18550 (FOB51_18550) | - | 2986690..2987529 (+) | 840 | WP_150351441.1 | SDR family oxidoreductase | - |
| FOB51_RS18555 (FOB51_18555) | - | 2987526..2989913 (-) | 2388 | WP_150351442.1 | ATP-dependent helicase | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17573.26 Da Isoelectric Point: 5.9743
>NTDB_id=387529 FOB51_RS18395 WP_099647955.1 2957947..2958435(+) (ssb) [Paracoccus yeei strain FDAARGOS_643]
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDDGYGYEGGSSGGGSGRSPSPASRPDFDDEI
PF
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDDGYGYEGGSSGGGSGRSPSPASRPDFDDEI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=387529 FOB51_RS18395 WP_099647955.1 2957947..2958435(+) (ssb) [Paracoccus yeei strain FDAARGOS_643]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCAACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGTTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGCTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGCGGTGATGACGGCTATG
GCTACGAAGGCGGCTCCTCGGGCGGCGGCTCGGGCCGCAGCCCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATC
CCGTTCTGA
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCAACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGTTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGCTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGCGGTGATGACGGCTATG
GCTACGAAGGCGGCTCCTCGGGCGGCGGCTCGGGCCGCAGCCCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATC
CCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
46.809 |
100 |
0.543 |
| ssb | Vibrio cholerae strain A1552 |
50.867 |
100 |
0.543 |
| ssb | Neisseria gonorrhoeae MS11 |
41.341 |
100 |
0.457 |
| ssb | Neisseria meningitidis MC58 |
41.341 |
100 |
0.457 |