Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB52_RS10460 Genome accession   NZ_CP044077
Coordinates   2230157..2231368 (-) Length   403 a.a.
NCBI ID   WP_115299816.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_644     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2225157..2236368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB52_RS10430 (FOB52_10430) raiA 2225933..2226250 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  FOB52_RS10435 (FOB52_10435) - 2226495..2227868 (-) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  FOB52_RS10440 (FOB52_10440) - 2228338..2228586 (-) 249 WP_115299813.1 GNAT family N-acetyltransferase -
  FOB52_RS10445 (FOB52_10445) yacG 2228586..2228789 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  FOB52_RS10450 (FOB52_10450) coaE 2228800..2229420 (-) 621 WP_115299814.1 dephospho-CoA kinase -
  FOB52_RS10455 (FOB52_10455) - 2229432..2230157 (-) 726 WP_115299815.1 A24 family peptidase -
  FOB52_RS10460 (FOB52_10460) pilC 2230157..2231368 (-) 1212 WP_115299816.1 type II secretion system F family protein Machinery gene
  FOB52_RS10465 (FOB52_10465) pilB 2231368..2232756 (-) 1389 WP_150332209.1 GspE/PulE family protein Machinery gene
  FOB52_RS10470 (FOB52_10470) pilA 2232756..2233190 (-) 435 WP_150332210.1 prepilin peptidase-dependent pilin Machinery gene
  FOB52_RS10475 (FOB52_10475) ampD 2233350..2233916 (+) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FOB52_RS10480 (FOB52_10480) rppH 2234502..2235098 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  FOB52_RS10485 (FOB52_10485) - 2235101..2235895 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46069.05 Da        Isoelectric Point: 9.7864

>NTDB_id=387520 FOB52_RS10460 WP_115299816.1 2230157..2231368(-) (pilC) [Pasteurella multocida strain FDAARGOS_644]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=387520 FOB52_RS10460 WP_115299816.1 2230157..2231368(-) (pilC) [Pasteurella multocida strain FDAARGOS_644]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTACATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATATCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAACATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATCGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395

Multiple sequence alignment