Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FOB65_RS15310 Genome accession   NZ_CP044074
Coordinates   2983037..2984377 (+) Length   446 a.a.
NCBI ID   WP_007160808.1    Uniprot ID   A0A329HJV6
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978037..2989377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS15290 (FOB65_15290) - 2978339..2979364 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  FOB65_RS15295 (FOB65_15295) - 2979474..2981096 (-) 1623 WP_150339526.1 NAD+ synthase -
  FOB65_RS15300 (FOB65_15300) - 2981228..2981476 (+) 249 WP_027600187.1 PP0621 family protein -
  FOB65_RS15305 (FOB65_15305) pilS 2981460..2983034 (+) 1575 WP_027600186.1 PAS domain-containing sensor histidine kinase Regulator
  FOB65_RS15310 (FOB65_15310) pilR 2983037..2984377 (+) 1341 WP_007160808.1 sigma-54 dependent transcriptional regulator Regulator
  FOB65_RS15315 (FOB65_15315) - 2984378..2985436 (-) 1059 WP_397391706.1 NAD(P)/FAD-dependent oxidoreductase -
  FOB65_RS15320 (FOB65_15320) - 2985577..2986101 (+) 525 WP_150340718.1 GspH/FimT family pseudopilin -
  FOB65_RS15325 (FOB65_15325) - 2986165..2986674 (+) 510 WP_223855370.1 GspH/FimT family pseudopilin -
  FOB65_RS15330 (FOB65_15330) pilV 2986671..2987174 (+) 504 WP_028700280.1 type IV pilus modification protein PilV -
  FOB65_RS15335 (FOB65_15335) - 2987171..2988268 (+) 1098 WP_150339531.1 PilW family protein -
  FOB65_RS15340 (FOB65_15340) - 2988265..2988750 (+) 486 WP_150339534.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48948.21 Da        Isoelectric Point: 5.8417

>NTDB_id=387465 FOB65_RS15310 WP_007160808.1 2983037..2984377(+) (pilR) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAILERESFDLCLTDMRLPDGSGLDLIQFIQQRFPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPAPAAAGASETQLLGESPPMRALRNQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGILANH
MLERLARDSGLAAATLGEDALAKLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=387465 FOB65_RS15310 WP_007160808.1 2983037..2984377(+) (pilR) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGATGAA
GCTCGACACCGCCAGCGCCAAGAACATCGCCGATGCCCGGGCCATCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGTCTGCCCGACGGCTCGGGACTGGACCTGATCCAGTTCATCCAGCAACGCTTTCCGCAATTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGTCTGGAAACCGCGGTCCAGGCCCTCAAGGCCGGTGCGTTCGACTACCTCACCAAGCCGGTGGA
CCTGCCGCGCCTGCGTGAACTGGTAGGCACGGCCCTGCGGCTGTCCGGGCCTGCCCCGGCGGCGGCCGGCGCCAGCGAAA
CCCAACTGCTCGGCGAATCGCCGCCCATGCGCGCCCTGCGCAACCAGATCGCCAAACTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAATCGGGCAGCGGCAAGGAGCGGGTGGCACGGCTGATCCATGAGCAGGGTCCGCGGGCCGGTCGGCC
CTTCGTGCCGGTCAACTGCGGCGCCATCCCCTCGGAGTTGGTGGAAAGCGAATTCTTCGGCCACCGCAAGGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGTCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTTCTCGACGAGGTAGCCGATCTG
CCGCTGCCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGATCAG
CCTGGACGTACGCATCCTCAGCGCCACCCACCGGGATCTGGCCGCCGAAGTCGCCGCCGGGACCTTCCGCCAGGACCTCT
ACTACCGCCTCAATGTCATCGAATTGCAGGTGCCGGCCCTGCGCGAGCGCCGCGAAGACATCGGCATCCTGGCCAACCAT
ATGCTCGAACGCCTGGCACGCGACTCCGGCCTGGCCGCGGCCACGCTGGGCGAGGATGCCCTGGCCAAGCTCAAGAGCTA
CCGTTTCCCCGGCAACGTGCGGGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTCTGCGAGGGCGACGTCATCCGCC
CGGCCGATCTGCGCCTGGCCGATGCCCCGGCAGCCACCGCCACCGGCGAAGCCAGCCTGGCCAACATCGCCAATCTGGAA
GACCACCTGGAGTCCATCGAACGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCGGA
ACGCCTGGGTCTCTCCTTCCGCTCGATGCGCTACCGACTGAAGAAGCTCGGAATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A329HJV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.942

100

0.809
  pilR Acinetobacter baumannii strain A118

49.356

100

0.516
  luxO Vibrio cholerae strain A1552

37.783

99.103

0.374

Multiple sequence alignment