Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FOB65_RS15305 Genome accession   NZ_CP044074
Coordinates   2981460..2983034 (+) Length   524 a.a.
NCBI ID   WP_027600186.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976460..2988034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS15280 (FOB65_15280) pgeF 2976463..2977194 (-) 732 WP_150339524.1 peptidoglycan editing factor PgeF -
  FOB65_RS15285 (FOB65_15285) rluD 2977191..2978150 (-) 960 WP_027600189.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FOB65_RS15290 (FOB65_15290) - 2978339..2979364 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  FOB65_RS15295 (FOB65_15295) - 2979474..2981096 (-) 1623 WP_150339526.1 NAD+ synthase -
  FOB65_RS15300 (FOB65_15300) - 2981228..2981476 (+) 249 WP_027600187.1 PP0621 family protein -
  FOB65_RS15305 (FOB65_15305) pilS 2981460..2983034 (+) 1575 WP_027600186.1 PAS domain-containing sensor histidine kinase Regulator
  FOB65_RS15310 (FOB65_15310) pilR 2983037..2984377 (+) 1341 WP_007160808.1 sigma-54 dependent transcriptional regulator Regulator
  FOB65_RS15315 (FOB65_15315) - 2984378..2985436 (-) 1059 WP_397391706.1 NAD(P)/FAD-dependent oxidoreductase -
  FOB65_RS15320 (FOB65_15320) - 2985577..2986101 (+) 525 WP_150340718.1 GspH/FimT family pseudopilin -
  FOB65_RS15325 (FOB65_15325) - 2986165..2986674 (+) 510 WP_223855370.1 GspH/FimT family pseudopilin -
  FOB65_RS15330 (FOB65_15330) pilV 2986671..2987174 (+) 504 WP_028700280.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57365.08 Da        Isoelectric Point: 7.5576

>NTDB_id=387464 FOB65_RS15305 WP_027600186.1 2981460..2983034(+) (pilS) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MSTATDPGTLRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGQLFRQASWAYLAINAVLAVGQRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLVNPAARRLLGVDDEDTIAPLALG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELATPDRRLAQIIQDQSRRMNRVVENVLQLSRRQQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGIGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=387464 FOB65_RS15305 WP_027600186.1 2981460..2983034(+) (pilS) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGAGCACCGCGACTGATCCAGGCACCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCACCTCTATCGCATCGTCATCGG
CCTGGCGCTGGTGGTGCTGATTTCCAGCGACCTGGACCAGCACTGGCTGCGCACCGTCGACGGCCAGCTGTTCCGCCAGG
CCAGCTGGGCCTATCTCGCCATCAACGCCGTGCTGGCGGTCGGCCAGCGGCTGTTGCGCGGTCGCGCCTTCACCCTGGCG
CTGATCGACATCCTCGCCCTGGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGCCTGCTGGTGGT
GACCGTCGGGGTGTCCAACGTCCTGATCCGTGGCCGCCGCGGCCTGCTGATCGCCGCCCTGGCGGCCATCGCCCTGTTGC
TGGCGACCGGCTATCTCGACCTGCGCCGCGGCGACAGCGGCAGTGGCTATGTGCAGGCAGCGGGCCTGGGCACCCTCTGC
TTCGCCACGGCGCTGCTGGTGCAGGGCCTGGTCCGGCGGCTGCTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACGGC
CGTGGCCGAACTAGAGGCCCTCAACGCCCTGATCCTCGAACGCATGCGGACCGGCATCCTGGTGTTCGATGCCGAATACC
AGGTGCTGCTGGTGAATCCGGCAGCCCGGCGCCTGCTGGGGGTGGACGACGAGGACACCATCGCCCCCCTGGCCCTGGGT
CTCGCCCAACGCCTCGAAGAGTGGGAGCGCAATCCCAGTATCCGGCCGGCGCCCTGGCGCGCCTATGCCAACGGCCCGCT
GCTGCAACCCAGCTTCGCCCGCCTGCAGCAGGGCGAAGGCGAGCGGGTGCTGACCTTTCTCGAAGACGTCTCGCGCATCG
CCCAGCAGGCCCAGCAACTCAAGCTCGCTTCCCTCGGCCGTCTCACCGCCGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCACGCTGCGCAATTGCTGCAGGAATCCGAAGAGTTGGCCACGCCGGACCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCGCGGCGGATGAACCGGGTGGTGGAAAACGTCCTGCAGCTGTCTCGCCGCCAGCAGGCCGCCCCTCAGC
TGATCGACCTGCGCTACTGGGCGCACCGCTTCGCCGGGGAGTTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAGCCGGGCACCCTGCAGACGCACATGGATCCCCACCAACTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAGAAGCACGGCATCGGCCAGGTCTGGCTCAGCACCTACCGCGATCCGGAAAGCGACCTGCCCA
TCCTCGAAGTGGTCGATGACGGACCGGGCGTCGCTGCCGAGCAACTCGACCACCTGTTCGAGCCCTTCTTCACCACCGAG
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGTGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAACGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(304-369)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

PAS domain (PAS_8)

(198-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.808

99.237

0.594

Multiple sequence alignment