Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FOB65_RS15180 Genome accession   NZ_CP044074
Coordinates   2954751..2955623 (-) Length   290 a.a.
NCBI ID   WP_150339509.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2949751..2960623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS15160 (FOB65_15160) recC 2949825..2953256 (-) 3432 WP_150339503.1 exodeoxyribonuclease V subunit gamma -
  FOB65_RS15165 (FOB65_15165) - 2953438..2953935 (+) 498 WP_042137113.1 hypothetical protein -
  FOB65_RS15170 (FOB65_15170) yacG 2953949..2954146 (-) 198 WP_007160931.1 DNA gyrase inhibitor YacG -
  FOB65_RS15175 (FOB65_15175) coaE 2954143..2954754 (-) 612 WP_150339506.1 dephospho-CoA kinase -
  FOB65_RS15180 (FOB65_15180) pilD 2954751..2955623 (-) 873 WP_150339509.1 A24 family peptidase Machinery gene
  FOB65_RS15185 (FOB65_15185) pilC 2955623..2956840 (-) 1218 WP_027600839.1 type II secretion system F family protein Machinery gene
  FOB65_RS15190 (FOB65_15190) pilB 2957051..2958745 (-) 1695 WP_150339511.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB65_RS15195 (FOB65_15195) - 2958958..2959422 (+) 465 WP_150339514.1 pilin -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31419.46 Da        Isoelectric Point: 8.4838

>NTDB_id=387461 FOB65_RS15180 WP_150339509.1 2954751..2955623(-) (pilD) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MALLEFLAGAPLAAALCALVLGLLVGSFLNVVVYRLPVMLRRAWQAEAREVLELPAEPAGAPFNLARPASRCPHCQRAVR
PWENVPVLSYLLLRGRCKGCQATISLRYPLVELACGLLSAWVIGHLGVTWQGGAFLLLTWGLLAASLIDADHQLLPDVIV
LPLLWLGLIVNQFGLFTNLGDAVWGAVAGYLSLWLVFQLFRLVTGKEGMGYGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVITLRLRRAESSTPLPFGPYLAVAGWIALLWGDQITGLYLNFAGFR

Nucleotide


Download         Length: 873 bp        

>NTDB_id=387461 FOB65_RS15180 WP_150339509.1 2954751..2955623(-) (pilD) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGCGCTGCTGGAATTTTTGGCCGGCGCACCGCTGGCCGCGGCGCTGTGCGCGCTGGTCCTGGGGCTGCTGGTGGGCAG
CTTTCTCAATGTGGTGGTCTATCGCCTGCCGGTGATGCTGAGGCGGGCTTGGCAGGCGGAGGCGCGTGAAGTACTGGAGC
TGCCGGCCGAGCCGGCAGGCGCCCCCTTCAACCTGGCGCGACCTGCTTCCCGCTGCCCCCACTGCCAGCGCGCCGTAAGG
CCCTGGGAAAACGTGCCGGTGCTGAGTTATCTGCTCTTGCGCGGGCGTTGCAAGGGCTGCCAGGCAACCATCAGCCTGCG
TTACCCGCTGGTGGAGCTGGCTTGTGGACTGCTGTCCGCCTGGGTCATCGGGCATCTGGGCGTGACTTGGCAGGGTGGTG
CCTTCCTGTTGCTGACCTGGGGCTTGCTGGCGGCCAGTCTGATCGATGCCGATCACCAACTGTTGCCGGACGTCATCGTC
CTGCCGCTACTGTGGCTGGGGCTGATCGTCAACCAGTTCGGCCTGTTCACCAATCTGGGTGATGCGGTCTGGGGCGCGGT
GGCGGGGTATCTGAGTCTCTGGCTGGTGTTCCAGCTGTTCCGCCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGCGGTTGGCAGATCCTGCCCCTGACCATCCTGCTGTCGTCGCTGGTGGGC
GCCATTCTGGGTGTCATCACCCTGCGGCTGCGGCGGGCGGAAAGCAGCACGCCCTTGCCCTTCGGTCCCTATCTCGCCGT
GGCGGGGTGGATTGCCTTGCTCTGGGGTGATCAAATAACCGGCCTGTACCTGAACTTCGCCGGATTCCGATGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50

97.931

0.49
  pilD Acinetobacter baumannii D1279779

51.685

92.069

0.476
  pilD Vibrio campbellii strain DS40M4

48.239

97.931

0.472
  pilD Acinetobacter nosocomialis M2

50.936

92.069

0.469
  pilD Neisseria gonorrhoeae MS11

49.815

93.448

0.466

Multiple sequence alignment