Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FOB70_RS25395 | Genome accession | NZ_CP044071 |
| Coordinates | 3258992..3259861 (-) | Length | 289 a.a. |
| NCBI ID | WP_005493974.1 | Uniprot ID | A0A249W3M2 |
| Organism | Vibrio parahaemolyticus strain FDAARGOS_662 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3253992..3264861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB70_RS25360 (FOB70_25360) | rpsP | 3254946..3255194 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| FOB70_RS25365 (FOB70_25365) | rimM | 3255223..3255771 (+) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| FOB70_RS25370 (FOB70_25370) | trmD | 3255799..3256542 (+) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FOB70_RS25375 (FOB70_25375) | rplS | 3256584..3256937 (+) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| FOB70_RS25380 (FOB70_25380) | yacG | 3257346..3257540 (-) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| FOB70_RS25385 (FOB70_25385) | zapD | 3257609..3258349 (-) | 741 | WP_005480890.1 | cell division protein ZapD | - |
| FOB70_RS25390 (FOB70_25390) | coaE | 3258377..3258991 (-) | 615 | WP_005493969.1 | dephospho-CoA kinase | - |
| FOB70_RS25395 (FOB70_25395) | pilD | 3258992..3259861 (-) | 870 | WP_005493974.1 | A24 family peptidase | Machinery gene |
| FOB70_RS25400 (FOB70_25400) | pilC | 3259926..3261149 (-) | 1224 | WP_005493981.1 | type II secretion system F family protein | Machinery gene |
| FOB70_RS25405 (FOB70_25405) | pilB | 3261173..3262858 (-) | 1686 | WP_005493983.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FOB70_RS25410 (FOB70_25410) | - | 3262860..3263312 (-) | 453 | WP_005493986.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| FOB70_RS25415 (FOB70_25415) | nadC | 3263576..3264463 (-) | 888 | WP_005493988.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32377.43 Da Isoelectric Point: 7.1971
>NTDB_id=387446 FOB70_RS25395 WP_005493974.1 3258992..3259861(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_662]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=387446 FOB70_RS25395 WP_005493974.1 3258992..3259861(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_662]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTAATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCTGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTAATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCTGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.866 |
92.734 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |