Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FOB71_RS21820 | Genome accession | NZ_CP044069 |
| Coordinates | 2978727..2979266 (-) | Length | 179 a.a. |
| NCBI ID | WP_011079389.1 | Uniprot ID | Q7MHB8 |
| Organism | Vibrio vulnificus strain FDAARGOS_663 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2973727..2984266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB71_RS21800 (FOB71_21795) | - | 2974144..2974464 (-) | 321 | WP_011079393.1 | MSHA biogenesis protein MshK | - |
| FOB71_RS21805 (FOB71_21800) | gspM | 2974457..2975107 (-) | 651 | WP_017420061.1 | type II secretion system protein GspM | - |
| FOB71_RS21810 (FOB71_21805) | - | 2975104..2976564 (-) | 1461 | WP_017420062.1 | MSHA biogenesis protein MshI | - |
| FOB71_RS21815 (FOB71_21810) | csrD | 2976577..2978574 (-) | 1998 | WP_026050228.1 | RNase E specificity factor CsrD | - |
| FOB71_RS21820 (FOB71_21815) | ssb | 2978727..2979266 (-) | 540 | WP_011079389.1 | single-stranded DNA-binding protein | Machinery gene |
| FOB71_RS21825 (FOB71_21820) | qstR | 2979566..2980213 (+) | 648 | WP_017420064.1 | response regulator transcription factor | Regulator |
| FOB71_RS21830 (FOB71_21825) | galU | 2980399..2981271 (+) | 873 | WP_017420065.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FOB71_RS21835 (FOB71_21830) | uvrA | 2981414..2984236 (+) | 2823 | WP_026050227.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19794.97 Da Isoelectric Point: 5.2358
>NTDB_id=387396 FOB71_RS21820 WP_011079389.1 2978727..2979266(-) (ssb) [Vibrio vulnificus strain FDAARGOS_663]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=387396 FOB71_RS21820 WP_011079389.1 2978727..2979266(-) (ssb) [Vibrio vulnificus strain FDAARGOS_663]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACGGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAACAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACGGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAACAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.333 |
100 |
0.838 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.553 |
| ssb | Neisseria meningitidis MC58 |
46.237 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
100 |
0.48 |