Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FOB71_RS12535 | Genome accession | NZ_CP044069 |
| Coordinates | 1099132..1099434 (+) | Length | 100 a.a. |
| NCBI ID | WP_017420947.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FDAARGOS_663 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1094132..1104434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB71_RS12520 (FOB71_12515) | lon | 1094146..1096497 (+) | 2352 | WP_017420949.1 | endopeptidase La | - |
| FOB71_RS12525 (FOB71_12520) | - | 1096691..1096963 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| FOB71_RS12530 (FOB71_12525) | ppiD | 1097140..1098999 (+) | 1860 | WP_026050445.1 | peptidylprolyl isomerase | - |
| FOB71_RS12535 (FOB71_12530) | comEA | 1099132..1099434 (+) | 303 | WP_017420947.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FOB71_RS12540 (FOB71_12535) | rrtA | 1099481..1100041 (-) | 561 | WP_277986152.1 | rhombosortase | - |
| FOB71_RS12545 (FOB71_12540) | - | 1100045..1100653 (+) | 609 | WP_017420945.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| FOB71_RS12550 (FOB71_12545) | - | 1100675..1102006 (-) | 1332 | WP_017420944.1 | anti-phage deoxyguanosine triphosphatase | - |
| FOB71_RS12555 (FOB71_12550) | yfbR | 1102012..1102596 (-) | 585 | WP_017420943.1 | 5'-deoxynucleotidase | - |
| FOB71_RS12560 (FOB71_12555) | - | 1102677..1103891 (-) | 1215 | WP_017420942.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10923.76 Da Isoelectric Point: 9.6577
>NTDB_id=387375 FOB71_RS12535 WP_017420947.1 1099132..1099434(+) (comEA) [Vibrio vulnificus strain FDAARGOS_663]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=387375 FOB71_RS12535 WP_017420947.1 1099132..1099434(+) (comEA) [Vibrio vulnificus strain FDAARGOS_663]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTTTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTTTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60 |
100 |
0.6 |
| comEA | Vibrio campbellii strain DS40M4 |
55 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
51.02 |
98 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
51.02 |
98 |
0.5 |