Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   FOB75_RS06260 Genome accession   NZ_CP044062
Coordinates   1210937..1211524 (-) Length   195 a.a.
NCBI ID   WP_150334330.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205937..1216524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS06240 (FOB75_06240) - 1206135..1207400 (-) 1266 WP_150334328.1 DUF945 family protein -
  FOB75_RS06245 (FOB75_06245) - 1207587..1209527 (+) 1941 WP_150334329.1 ATP-binding protein -
  FOB75_RS06250 (FOB75_06250) - 1209524..1210021 (+) 498 WP_005485573.1 response regulator -
  FOB75_RS06255 (FOB75_06255) - 1210218..1210763 (+) 546 WP_005459590.1 hypothetical protein -
  FOB75_RS06260 (FOB75_06260) tfoX 1210937..1211524 (-) 588 WP_150334330.1 TfoX/Sxy family DNA transformation protein Regulator
  FOB75_RS06275 (FOB75_06275) - 1211895..1212815 (+) 921 WP_020840442.1 HDOD domain-containing protein -
  FOB75_RS06280 (FOB75_06280) - 1212923..1213828 (+) 906 WP_020840441.1 lysine exporter LysO family protein -
  FOB75_RS06285 (FOB75_06285) - 1214036..1214548 (+) 513 WP_053318713.1 hypothetical protein -
  FOB75_RS06295 (FOB75_06295) panP 1214709..1216355 (+) 1647 WP_015296574.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22517.84 Da        Isoelectric Point: 6.4704

>NTDB_id=387281 FOB75_RS06260 WP_150334330.1 1210937..1211524(-) (tfoX) [Vibrio parahaemolyticus strain FDAARGOS_667]
MDMTDQAFFKYVRNFNEYQKRSMFGGIGLFSDDAMFALVSNDCCYLRGGNDLDEEFTLLNCEKYKHVKKQTTATVNYYDV
TDLFESGFTGLDDLLRKSIDCSIKERKYQKSSASKRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=387281 FOB75_RS06260 WP_150334330.1 1210937..1211524(-) (tfoX) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAATTTTAATGAGTATCAGAAACGTTCTATGTTTGGTGGTAT
CGGCTTGTTTAGCGATGACGCCATGTTTGCGCTTGTCAGCAATGATTGCTGTTATTTGCGCGGCGGTAATGATTTAGACG
AAGAATTTACTCTGCTTAATTGTGAAAAATACAAGCACGTCAAAAAACAGACGACGGCTACTGTAAACTATTATGACGTA
ACCGATTTATTTGAGTCCGGATTTACTGGTCTTGACGATTTGTTACGCAAATCTATTGATTGCTCAATTAAGGAGCGAAA
ATACCAAAAGTCTTCTGCAAGTAAACGTTTGAGAGATCTACCGAACATGCAGCTTACATTAGAGCGCATGGTTAAAAAGG
CGGGTATTGATGATGTTGAAACCTTTTTGGAACTTGGTCCAGTTGAAGTGTTCAACAAAGTAAGAGTTGCTTACGGCAAT
GATGTTGACGTTAAACTGCTGTGGAAGTTTGCTGGTGCCATTGATGGTGTGCACTGGAAACTAATCCAAGAGCCGCGCAA
AAAACAGTTACTGGCACTGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.394

98.974

0.677
  tfoX Vibrio cholerae strain A1552

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559

Multiple sequence alignment