Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STAUR_RS07980 Genome accession   NC_014623
Coordinates   1987320..1987799 (+) Length   159 a.a.
NCBI ID   WP_002609591.1    Uniprot ID   Q08U58
Organism   Stigmatella aurantiaca DW4/3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1982320..1992799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAUR_RS07960 (STAUR_1619) - 1982880..1983341 (+) 462 WP_002617069.1 PTS sugar transporter subunit IIA -
  STAUR_RS07965 (STAUR_1620) - 1983375..1984220 (+) 846 WP_002617053.1 hypothetical protein -
  STAUR_RS07970 (STAUR_1621) dtd 1984228..1984689 (-) 462 WP_002617062.1 D-aminoacyl-tRNA deacylase -
  STAUR_RS07975 (STAUR_1622) dacB 1984879..1987116 (+) 2238 WP_002617071.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  STAUR_RS07980 (STAUR_1623) ssb 1987320..1987799 (+) 480 WP_002609591.1 single-stranded DNA-binding protein Machinery gene
  STAUR_RS07985 (STAUR_1624) - 1987882..1988724 (-) 843 WP_037583933.1 ion transporter -
  STAUR_RS07990 (STAUR_1625) - 1988967..1989539 (+) 573 WP_232293673.1 hypothetical protein -
  STAUR_RS07995 (STAUR_1626) - 1989549..1990241 (-) 693 WP_013374791.1 hypothetical protein -
  STAUR_RS08000 (STAUR_1627) - 1990259..1990669 (-) 411 WP_002617044.1 hypothetical protein -
  STAUR_RS08005 (STAUR_1628) - 1990784..1991974 (-) 1191 WP_013374792.1 cytochrome P450 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17040.81 Da        Isoelectric Point: 5.3106

>NTDB_id=38692 STAUR_RS07980 WP_002609591.1 1987320..1987799(+) (ssb) [Stigmatella aurantiaca DW4/3-1]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDSWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWTDKENRKNYTTEVVASSVTFLGGRDAGEGSGMGSRRGGGASSRGGEPDYGAPPPGMDDGMNQGGSGDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=38692 STAUR_RS07980 WP_002609591.1 1987320..1987799(+) (ssb) [Stigmatella aurantiaca DW4/3-1]
ATGGCTGGAGGCGTCAACAAGGTCATTCTCATTGGCAACCTCGGTGCGGACCCCGAGGTGCGATTCACGCCGGGGGGACA
AGCGGTCGCCAACTTCCGGATCGCCACCAGCGATAGCTGGACGGACAAGAACGGACAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTGAAGAAGGGCCGGCAGTGCTTCGTCGAGGGC
CGGCTCCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAGCTCGGTCACGTT
CCTGGGCGGGCGTGACGCGGGCGAGGGCTCGGGCATGGGGAGCCGTCGCGGCGGAGGCGCTTCTTCCCGGGGAGGCGAGC
CCGACTACGGCGCTCCGCCTCCGGGGATGGACGACGGCATGAACCAGGGCGGCAGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q08U58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.809

100

0.516
  ssb Neisseria gonorrhoeae MS11

41.86

100

0.453
  ssb Glaesserella parasuis strain SC1401

42.208

96.855

0.409
  ssb Neisseria meningitidis MC58

51.786

70.44

0.365

Multiple sequence alignment