Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F1E05_RS10710 Genome accession   NZ_CP043929
Coordinates   2396449..2396916 (-) Length   155 a.a.
NCBI ID   WP_150048302.1    Uniprot ID   -
Organism   Methylomonas rhizoryzae strain GJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2391449..2401916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1E05_RS10690 - 2392004..2394151 (+) 2148 WP_150048295.1 FAD-dependent oxidoreductase -
  F1E05_RS10695 - 2394148..2394831 (+) 684 WP_150048296.1 TIGR04283 family arsenosugar biosynthesis glycosyltransferase -
  F1E05_RS10700 - 2394833..2395624 (+) 792 WP_150048298.1 sterol desaturase family protein -
  F1E05_RS10705 - 2395628..2396263 (+) 636 WP_150048300.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase -
  F1E05_RS10710 ssb 2396449..2396916 (-) 468 WP_150048302.1 single-stranded DNA-binding protein Machinery gene
  F1E05_RS10715 - 2396954..2398339 (-) 1386 WP_232056625.1 MFS transporter -
  F1E05_RS10720 - 2398640..2399020 (+) 381 WP_150048304.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17406.28 Da        Isoelectric Point: 5.3011

>NTDB_id=386595 F1E05_RS10710 WP_150048302.1 2396449..2396916(-) (ssb) [Methylomonas rhizoryzae strain GJ1]
MLNKVMLIGRLGADPEVRFMPSGDQITTIRLATSRRWKDRNTGERKEETEWHRVVFFGQTAKVASDYLRKGSQVYVEGRI
RTQKWQGQDGQDRYTTEIVGETMNMLDSRSGGTASYADTAPPPGRDADNRPPASAPMSSQPSPASYDDFDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=386595 F1E05_RS10710 WP_150048302.1 2396449..2396916(-) (ssb) [Methylomonas rhizoryzae strain GJ1]
ATGTTGAACAAAGTCATGCTGATCGGGCGTTTGGGTGCAGACCCTGAAGTACGTTTCATGCCCAGCGGCGATCAGATTAC
CACTATCCGTCTGGCCACCAGTCGGCGCTGGAAAGACCGTAACACCGGAGAGCGCAAGGAAGAGACCGAGTGGCACCGAG
TCGTGTTTTTCGGCCAAACGGCCAAAGTTGCCAGCGACTATCTGCGCAAGGGCAGTCAGGTTTACGTCGAAGGGCGGATT
CGGACGCAGAAGTGGCAGGGGCAAGACGGCCAGGACCGCTACACGACCGAAATCGTTGGCGAGACGATGAATATGTTGGA
CAGCCGTAGCGGCGGGACGGCCAGTTATGCCGACACCGCGCCGCCGCCCGGCCGTGACGCCGATAACCGCCCGCCTGCGT
CTGCGCCTATGTCCTCGCAGCCGTCGCCTGCCAGTTACGACGATTTCGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.542
  ssb Vibrio cholerae strain A1552

48.256

100

0.535
  ssb Neisseria meningitidis MC58

43.353

100

0.484
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.484

Multiple sequence alignment