Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F0362_RS27000 Genome accession   NZ_CP043830
Coordinates   5186379..5186909 (-) Length   176 a.a.
NCBI ID   WP_000981964.1    Uniprot ID   -
Organism   Bacillus sp. BS98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5181379..5191909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0362_RS26980 (F0362_26980) rplI 5182590..5183036 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  F0362_RS26985 (F0362_26985) - 5183033..5185006 (-) 1974 WP_001113905.1 DHH family phosphoesterase -
  F0362_RS26990 (F0362_26990) - 5185085..5186020 (-) 936 WP_149890050.1 YybS family protein -
  F0362_RS26995 (F0362_26995) rpsR 5186101..5186334 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  F0362_RS27000 (F0362_27000) ssbA 5186379..5186909 (-) 531 WP_000981964.1 single-stranded DNA-binding protein Machinery gene
  F0362_RS27005 (F0362_27005) rpsF 5186936..5187226 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  F0362_RS27010 (F0362_27010) ychF 5187418..5188518 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  F0362_RS27015 (F0362_27015) - 5188633..5188830 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  F0362_RS27020 (F0362_27020) - 5188851..5189732 (-) 882 WP_000365117.1 mechanosensitive ion channel family protein -
  F0362_RS27025 (F0362_27025) yyaC 5189992..5190588 (+) 597 WP_149890051.1 spore protease YyaC -
  F0362_RS27030 (F0362_27030) spo0J 5190609..5191460 (-) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18999.73 Da        Isoelectric Point: 4.9222

>NTDB_id=386096 F0362_RS27000 WP_000981964.1 5186379..5186909(-) (ssbA) [Bacillus sp. BS98]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNSGNTGNSGFTKNDDPF
SNVGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=386096 F0362_RS27000 WP_000981964.1 5186379..5186909(-) (ssbA) [Bacillus sp. BS98]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGCAACTCAGGTAACACTGGAAACTCTGGATTTACGAAGAATGACGATCCATTT
TCGAATGTTGGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.832

100

0.71
  ssb Latilactobacillus sakei subsp. sakei 23K

56.354

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.375

Multiple sequence alignment