Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0U64_RS28400 Genome accession   NZ_CP043820
Coordinates   6273271..6273792 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter xylosoxidans strain AX1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6268271..6278792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U64_RS28380 (F0U64_28380) - 6270378..6270968 (-) 591 WP_006389668.1 TetR/AcrR family transcriptional regulator -
  F0U64_RS28385 (F0U64_28385) - 6271100..6271405 (-) 306 WP_020925844.1 DUF4148 domain-containing protein -
  F0U64_RS28390 (F0U64_28390) - 6271486..6271791 (-) 306 WP_006389666.1 DUF4148 domain-containing protein -
  F0U64_RS28395 (F0U64_28395) - 6272056..6272784 (-) 729 WP_149895617.1 class I SAM-dependent methyltransferase -
  F0U64_RS28400 (F0U64_28400) ssb 6273271..6273792 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  F0U64_RS28405 (F0U64_28405) - 6274075..6275259 (-) 1185 WP_024070768.1 MFS transporter -
  F0U64_RS28410 (F0U64_28410) uvrA 6275394..6278249 (+) 2856 WP_394810571.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=386002 F0U64_RS28400 WP_026382027.1 6273271..6273792(-) (ssb) [Achromobacter xylosoxidans strain AX1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=386002 F0U64_RS28400 WP_026382027.1 6273271..6273792(-) (ssb) [Achromobacter xylosoxidans strain AX1]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGATGGCGGCGGCGGTGGCGGCAGCTATGGCGGAGGCGGCGGTTACGACGACGCGCCGGCAC
GCCAGCCGCAGCAACGCGCCCCGGCCCAGCGCCCGGCGCCGCAACAGCGTCCGGCACCGCAGGCCGCGCCCGCCGGTGGC
GGCGCCAACCTGGCCGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532

Multiple sequence alignment