Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HG697_RS08900 | Genome accession | NZ_CP051623 |
| Coordinates | 1799151..1799642 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0ABU0A417 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1794151..1804642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG697_RS08885 (HG697_08890) | - | 1796884..1797828 (+) | 945 | WP_003059456.1 | magnesium transporter CorA family protein | - |
| HG697_RS08890 (HG697_08895) | - | 1797960..1798616 (+) | 657 | WP_003059462.1 | DUF1129 domain-containing protein | - |
| HG697_RS08895 (HG697_08900) | rpsR | 1798747..1798986 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| HG697_RS08900 (HG697_08905) | ssb | 1799151..1799642 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| HG697_RS08905 (HG697_08910) | rpsF | 1799664..1799954 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| HG697_RS10655 (HG697_08915) | - | 1800913..1801206 (-) | 294 | WP_015058032.1 | hypothetical protein | - |
| HG697_RS08915 (HG697_08920) | mutY | 1801372..1802538 (+) | 1167 | WP_003055161.1 | A/G-specific adenine glycosylase | - |
| HG697_RS08920 (HG697_08925) | - | 1802617..1803972 (+) | 1356 | Protein_1705 | IS3 family transposase | - |
| HG697_RS08925 (HG697_08930) | trxA | 1804033..1804347 (-) | 315 | WP_003052691.1 | thioredoxin | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=385846 HG697_RS08900 WP_002983122.1 1799151..1799642(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=385846 HG697_RS08900 WP_002983122.1 1799151..1799642(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |