Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | F1539_RS07205 | Genome accession | NZ_CP043772 |
| Coordinates | 1414277..1414690 (-) | Length | 137 a.a. |
| NCBI ID | WP_013526476.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae biotype aegyptius strain HE24/F3037 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1409277..1419690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1539_RS07175 (F1539_07180) | - | 1409660..1409932 (-) | 273 | WP_013526482.1 | HU family DNA-binding protein | - |
| F1539_RS07180 (F1539_07185) | - | 1410072..1410662 (-) | 591 | WP_013526481.1 | YjaG family protein | - |
| F1539_RS07185 (F1539_07190) | nudC | 1410698..1411492 (-) | 795 | WP_013526480.1 | NAD(+) diphosphatase | - |
| F1539_RS07190 (F1539_07195) | nfuA | 1411559..1412155 (-) | 597 | WP_013526479.1 | Fe-S biogenesis protein NfuA | - |
| F1539_RS07195 (F1539_07200) | - | 1412231..1412917 (-) | 687 | WP_013526478.1 | ComF family protein | - |
| F1539_RS07200 (F1539_07205) | comE | 1412930..1414267 (-) | 1338 | WP_013526477.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| F1539_RS07205 (F1539_07210) | comD | 1414277..1414690 (-) | 414 | WP_013526476.1 | pilus assembly protein PilP | Machinery gene |
| F1539_RS07210 (F1539_07215) | comC | 1414687..1415208 (-) | 522 | WP_041174979.1 | competence protein ComC | Machinery gene |
| F1539_RS07215 (F1539_07220) | comB | 1415205..1415711 (-) | 507 | WP_013526474.1 | hypothetical protein | Machinery gene |
| F1539_RS07220 (F1539_07225) | comA | 1415712..1416509 (-) | 798 | WP_013526473.1 | pilus assembly protein PilM | Machinery gene |
| F1539_RS07225 (F1539_07230) | - | 1416608..1419208 (+) | 2601 | WP_013526472.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=385846 F1539_RS07205 WP_013526476.1 1414277..1414690(-) (comD) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=385846 F1539_RS07205 WP_013526476.1 1414277..1414690(-) (comD) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae 86-028NP |
94.161 |
100 |
0.942 |