Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPPC_RS00200 | Genome accession | NC_014555 |
| Coordinates | 35570..35683 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217868.1 | Uniprot ID | A0AAE7DTV1 |
| Organism | Helicobacter pylori PeCan4 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30570..40683
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC_RS00175 (HPPC_00155) | - | 30616..32841 (+) | 2226 | WP_001051493.1 | AAA family ATPase | - |
| HPPC_RS00180 (HPPC_00160) | panD | 32831..33181 (+) | 351 | WP_000142282.1 | aspartate 1-decarboxylase | - |
| HPPC_RS00185 (HPPC_00165) | - | 33192..33485 (+) | 294 | WP_000347166.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPPC_RS00190 (HPPC_00170) | - | 33485..34492 (+) | 1008 | WP_000468452.1 | PDZ domain-containing protein | - |
| HPPC_RS00195 (HPPC_00175) | comB6 | 34498..35553 (+) | 1056 | WP_000786686.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPPC_RS00200 (HPPC_00180) | comB7 | 35570..35683 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HPPC_RS00205 (HPPC_00185) | comB8 | 35680..36423 (+) | 744 | WP_000660501.1 | type IV secretion system protein | Machinery gene |
| HPPC_RS00210 (HPPC_00190) | comB9 | 36423..37391 (+) | 969 | WP_013356092.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPPC_RS00215 (HPPC_00195) | comB10 | 37384..38520 (+) | 1137 | WP_001045861.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPPC_RS00220 (HPPC_00200) | - | 38591..40003 (+) | 1413 | WP_000694802.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4323.29 Da Isoelectric Point: 9.3572
>NTDB_id=38556 HPPC_RS00200 WP_001217868.1 35570..35683(+) (comB7) [Helicobacter pylori PeCan4]
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=38556 HPPC_RS00200 WP_001217868.1 35570..35683(+) (comB7) [Helicobacter pylori PeCan4]
ATGAGAATTTTTTTTGTTATTATGGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACACTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACACTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
91.892 |
100 |
0.919 |