Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMV_RS07475 Genome accession   NC_017501
Coordinates   1474788..1475387 (-) Length   199 a.a.
NCBI ID   WP_014574101.1    Uniprot ID   -
Organism   Neisseria meningitidis 8013     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469788..1480387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS07455 (NMV_1506) dapC 1470345..1471532 (-) 1188 WP_014574099.1 succinyldiaminopimelate transaminase -
  NMV_RS07460 (NMV_1507) dut 1471609..1472061 (-) 453 WP_002222651.1 dUTP diphosphatase -
  NMV_RS07465 (NMV_1508) - 1472207..1472635 (+) 429 Protein_1386 AzlC family ABC transporter permease -
  NMV_RS07470 (NMV_1509) pilX 1474310..1474783 (-) 474 WP_173277181.1 PilX family type IV pilin Machinery gene
  NMV_RS07475 (NMV_1510) pilK 1474788..1475387 (-) 600 WP_014574101.1 pilus assembly PilX family protein Machinery gene
  NMV_RS07480 (NMV_1511) pilJ 1475366..1476331 (-) 966 WP_014574102.1 PilW family protein Machinery gene
  NMV_RS07485 (NMV_1512) pilV 1476328..1476948 (-) 621 WP_014574103.1 type IV pilus modification protein PilV Regulator
  NMV_RS07490 (NMV_1513) pilH 1476981..1477646 (-) 666 WP_014574104.1 GspH/FimT family pseudopilin Machinery gene
  NMV_RS07495 (NMV_1514) dnaB 1477955..1479361 (-) 1407 WP_002219448.1 replicative DNA helicase -
  NMV_RS07500 (NMV_1515) - 1479524..1480111 (+) 588 WP_002239681.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21971.85 Da        Isoelectric Point: 5.0957

>NTDB_id=38554 NMV_RS07475 WP_014574101.1 1474788..1475387(-) (pilK) [Neisseria meningitidis 8013]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGEGLCTAVNVRTNTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=38554 NMV_RS07475 WP_014574101.1 1474788..1475387(-) (pilK) [Neisseria meningitidis 8013]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAGAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGA
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.714

100

0.874

Multiple sequence alignment