Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPC_RS00100 Genome accession   NC_014555
Coordinates   13771..14034 (+) Length   87 a.a.
NCBI ID   WP_000584974.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8771..19034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS00075 (HPPC_00055) groES 9047..9409 (-) 363 WP_000671960.1 co-chaperone GroES -
  HPPC_RS00080 (HPPC_00060) dnaG 9696..11375 (+) 1680 WP_000601568.1 DNA primase -
  HPPC_RS00085 (HPPC_00065) - 11372..12424 (+) 1053 WP_000721170.1 MnmA/TRMU family protein -
  HPPC_RS00090 (HPPC_00070) - 12517..13344 (+) 828 WP_001154916.1 DUF5718 family protein -
  HPPC_RS00095 (HPPC_00075) comB2 13490..13771 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPPC_RS00100 (HPPC_00080) comB3 13771..14034 (+) 264 WP_000584974.1 hypothetical protein Machinery gene
  HPPC_RS00105 (HPPC_00085) comB4 14036..16399 (+) 2364 WP_000890521.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPC_RS00110 (HPPC_00090) - 16704..18044 (+) 1341 WP_013356091.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10094.17 Da        Isoelectric Point: 9.7585

>NTDB_id=38553 HPPC_RS00100 WP_000584974.1 13771..14034(+) (comB3) [Helicobacter pylori PeCan4]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=38553 HPPC_RS00100 WP_000584974.1 13771..14034(+) (comB3) [Helicobacter pylori PeCan4]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACTAAATATTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment