Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPPC_RS00095 Genome accession   NC_014555
Coordinates   13490..13771 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori PeCan4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8490..18771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS00075 (HPPC_00055) groES 9047..9409 (-) 363 WP_000671960.1 co-chaperone GroES -
  HPPC_RS00080 (HPPC_00060) dnaG 9696..11375 (+) 1680 WP_000601568.1 DNA primase -
  HPPC_RS00085 (HPPC_00065) - 11372..12424 (+) 1053 WP_000721170.1 MnmA/TRMU family protein -
  HPPC_RS00090 (HPPC_00070) - 12517..13344 (+) 828 WP_001154916.1 DUF5718 family protein -
  HPPC_RS00095 (HPPC_00075) comB2 13490..13771 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPPC_RS00100 (HPPC_00080) comB3 13771..14034 (+) 264 WP_000584974.1 hypothetical protein Machinery gene
  HPPC_RS00105 (HPPC_00085) comB4 14036..16399 (+) 2364 WP_000890521.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPC_RS00110 (HPPC_00090) - 16704..18044 (+) 1341 WP_013356091.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=38552 HPPC_RS00095 WP_001272686.1 13490..13771(+) (comB2) [Helicobacter pylori PeCan4]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=38552 HPPC_RS00095 WP_001272686.1 13490..13771(+) (comB2) [Helicobacter pylori PeCan4]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment