Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMV_RS07480 Genome accession   NC_017501
Coordinates   1475366..1476331 (-) Length   321 a.a.
NCBI ID   WP_014574102.1    Uniprot ID   -
Organism   Neisseria meningitidis 8013     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470366..1481331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS07460 (NMV_1507) dut 1471609..1472061 (-) 453 WP_002222651.1 dUTP diphosphatase -
  NMV_RS07465 (NMV_1508) - 1472207..1472635 (+) 429 Protein_1386 AzlC family ABC transporter permease -
  NMV_RS07470 (NMV_1509) pilX 1474310..1474783 (-) 474 WP_173277181.1 PilX family type IV pilin Machinery gene
  NMV_RS07475 (NMV_1510) pilK 1474788..1475387 (-) 600 WP_014574101.1 pilus assembly PilX family protein Machinery gene
  NMV_RS07480 (NMV_1511) pilJ 1475366..1476331 (-) 966 WP_014574102.1 PilW family protein Machinery gene
  NMV_RS07485 (NMV_1512) pilV 1476328..1476948 (-) 621 WP_014574103.1 type IV pilus modification protein PilV Regulator
  NMV_RS07490 (NMV_1513) pilH 1476981..1477646 (-) 666 WP_014574104.1 GspH/FimT family pseudopilin Machinery gene
  NMV_RS07495 (NMV_1514) dnaB 1477955..1479361 (-) 1407 WP_002219448.1 replicative DNA helicase -
  NMV_RS07500 (NMV_1515) - 1479524..1480111 (+) 588 WP_002239681.1 superoxide dismutase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35236.03 Da        Isoelectric Point: 8.7019

>NTDB_id=38555 NMV_RS07480 WP_014574102.1 1475366..1476331(-) (pilJ) [Neisseria meningitidis 8013]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKNVVSDVAQKNRLFSLKGSSANKLIPNGTDNKLIPITESLDIGYQGFTQRLNALVFQYGIDDLDASAETVV
VSSCSKIAKQGKKISTLQEAKSALQITDDDKQNGNITRQRYVVNAYAVGRIAGEDGLFRFQLDDKGKWGNPQLLVKKINK
MDIRYIYVSDCPEDDDAGKEEKFKYTGTFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRT
L

Nucleotide


Download         Length: 966 bp        

>NTDB_id=38555 NMV_RS07480 WP_014574102.1 1475366..1476331(-) (pilJ) [Neisseria meningitidis 8013]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGAATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCAACGGTACAGATAATAAACTTATCCCCATAACGGAATCTTTAGATATCGGATATC
AGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCTGAGACTGTTGTA
GTCAGCAGCTGTTCCAAAATAGCAAAACAGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTAC
TGATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGTATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTG
AGGACGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAA
ATGGATATACGGTATATTTATGTTTCCGATTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAAAATTCAAATATACGGG
TACATTCGACAGCTCCACAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTG
CCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACA
CTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.398

100

0.766

Multiple sequence alignment