Detailed information NTG0038555

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPPC_RS00195
• Genome accession: NC_014555
• Coordinates: 34498..35553 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786686.1
• Uniprot ID: -
• Organism: Helicobacter pylori PeCan4
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29498..40553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPC_RS00165 (HPPC_00145)	-	29913..30326 (+)	414	WP_001023006.1	universal stress protein	-
HPPC_RS00170 (HPPC_00150)	-	30341..30616 (+)	276	WP_000784855.1	ATP-dependent Clp protease adaptor ClpS	-
HPPC_RS00175 (HPPC_00155)	-	30616..32841 (+)	2226	WP_001051493.1	AAA family ATPase	-
HPPC_RS00180 (HPPC_00160)	panD	32831..33181 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HPPC_RS00185 (HPPC_00165)	-	33192..33485 (+)	294	WP_000347166.1	YbaB/EbfC family nucleoid-associated protein	-
HPPC_RS00190 (HPPC_00170)	-	33485..34492 (+)	1008	WP_000468452.1	PDZ domain-containing protein	-
HPPC_RS00195 (HPPC_00175)	comB6	34498..35553 (+)	1056	WP_000786686.1	P-type conjugative transfer protein TrbL	Machinery gene
HPPC_RS00200 (HPPC_00180)	comB7	35570..35683 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPPC_RS00205 (HPPC_00185)	comB8	35680..36423 (+)	744	WP_000660501.1	type IV secretion system protein	Machinery gene
HPPC_RS00210 (HPPC_00190)	comB9	36423..37391 (+)	969	WP_013356092.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPPC_RS00215 (HPPC_00195)	comB10	37384..38520 (+)	1137	WP_001045861.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPC_RS00220 (HPPC_00200)	-	38591..40003 (+)	1413	WP_000694802.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39750.70 Da
• Isoelectric Point: 8.8165

>NTDB_id=38555 HPPC_RS00195 WP_000786686.1 34498..35553(+) (comB6) [Helicobacter pylori PeCan4]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSVNLSQNALNSLQYITTPPASSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=38555 HPPC_RS00195 WP_000786686.1 34498..35553(+) (comB6) [Helicobacter pylori PeCan4]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTTGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGTGTTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966