Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0Q04_RS04550 Genome accession   NZ_CP043575
Coordinates   993743..994333 (+) Length   196 a.a.
NCBI ID   WP_182344686.1    Uniprot ID   -
Organism   Comamonas koreensis strain T50-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 988743..999333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q04_RS04540 uvrA 988891..992037 (-) 3147 WP_116926095.1 excinuclease ABC subunit UvrA -
  F0Q04_RS04545 - 992353..993552 (+) 1200 WP_116926096.1 MFS transporter -
  F0Q04_RS04550 ssb 993743..994333 (+) 591 WP_182344686.1 single-stranded DNA-binding protein Machinery gene
  F0Q04_RS04555 - 994776..995246 (-) 471 WP_182344688.1 DUF417 family protein -
  F0Q04_RS04560 - 995286..995846 (-) 561 WP_116926099.1 TetR/AcrR family transcriptional regulator -
  F0Q04_RS04565 - 996176..996940 (+) 765 WP_182344690.1 transporter substrate-binding domain-containing protein -
  F0Q04_RS04570 - 996937..997416 (+) 480 WP_182344692.1 YbaK/prolyl-tRNA synthetase associated domain-containing protein -
  F0Q04_RS04575 - 997465..998979 (+) 1515 WP_182344694.1 rhomboid family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20804.91 Da        Isoelectric Point: 5.9505

>NTDB_id=385249 F0Q04_RS04550 WP_182344686.1 993743..994333(+) (ssb) [Comamonas koreensis strain T50-37]
MASVNKVIIVGNLGRDPEIRTFPSGDQVANVTIATTDRWRDKNSGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGQGSPGGQGGGDDYGYGDSGYGDQGGGGGAPAGNYQRRAPAPAMAPA
AAPRQAPPPRPAPAPMPAPAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=385249 F0Q04_RS04550 WP_182344686.1 993743..994333(+) (ssb) [Comamonas koreensis strain T50-37]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGCCGCGACCCTGAAATCCGCACCTTCCCCTCGGGCGACCA
GGTGGCCAACGTCACTATCGCCACCACCGACCGCTGGCGCGACAAGAACAGCGGTGAGAACAAGGAAGCCACCGAGTGGC
ACCGTGTGGTGTTCAATGGCCGTCTGGCTGAAATCGTCGGCCAGTACCTGCGCAAGGGCAGCCAAGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAAGCCACCGGCCAGGAGCGCTATGCGACGGAAATCCGCGCTGACTCGATGCA
GATGCTGGGCAGCCGCCAAGGCCAGGGCAGCCCAGGCGGCCAAGGCGGTGGCGATGACTACGGCTATGGCGACAGCGGCT
ACGGCGACCAGGGCGGTGGCGGCGGCGCCCCCGCTGGCAACTACCAGCGCCGTGCACCGGCACCGGCAATGGCTCCGGCC
GCTGCGCCCCGCCAGGCGCCGCCTCCCCGTCCAGCACCGGCACCTATGCCTGCGCCAGCCCCACGCGCCGCTTCGGGCTT
TGACGATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.739

100

0.526
  ssb Vibrio cholerae strain A1552

49.02

100

0.51
  ssb Neisseria gonorrhoeae MS11

44.615

99.49

0.444
  ssb Neisseria meningitidis MC58

43

100

0.439

Multiple sequence alignment