Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG582_RS05690 Genome accession   NZ_CP051534
Coordinates   1212756..1213805 (+) Length   349 a.a.
NCBI ID   WP_202143694.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207756..1218805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS05675 (HG582_05680) - 1208635..1209906 (-) 1272 WP_202143692.1 DUF874 family protein -
  HG582_RS05680 (HG582_05685) asd 1210339..1211379 (-) 1041 WP_120844710.1 aspartate-semialdehyde dehydrogenase -
  HG582_RS05685 (HG582_05690) hisS 1211366..1212694 (-) 1329 WP_202143693.1 histidine--tRNA ligase -
  HG582_RS05690 (HG582_05695) waaF 1212756..1213805 (+) 1050 WP_202143694.1 lipopolysaccharide heptosyltransferase II Regulator
  HG582_RS05695 (HG582_05700) - 1213998..1214222 (-) 225 WP_202143695.1 hypothetical protein -
  HG582_RS05700 (HG582_05705) - 1214440..1215429 (+) 990 WP_202143696.1 aldo/keto reductase -
  HG582_RS05705 (HG582_05710) fusA 1215961..1218039 (-) 2079 WP_202143697.1 elongation factor G -
  HG582_RS05710 (HG582_05715) rpsG 1218051..1218518 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39395.05 Da        Isoelectric Point: 9.1205

>NTDB_id=385241 HG582_RS05690 WP_202143694.1 1212756..1213805(+) (waaF) [Helicobacter pylori strain LIM-009]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFVLVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIECIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLKEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385241 HG582_RS05690 WP_202143694.1 1212756..1213805(+) (waaF) [Helicobacter pylori strain LIM-009]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTGTCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTGGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAACGATCGTATTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAAA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367

Multiple sequence alignment