Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0Q02_RS25990 Genome accession   NZ_CP043573
Coordinates   5679102..5679650 (-) Length   182 a.a.
NCBI ID   WP_003060089.1    Uniprot ID   A0A5N7W6A9
Organism   Comamonas testosteroni strain R5-28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5674102..5684650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q02_RS25970 - 5675031..5675438 (-) 408 WP_080553925.1 GtrA family protein -
  F0Q02_RS25975 - 5675419..5677308 (-) 1890 WP_003060094.1 hypothetical protein -
  F0Q02_RS25980 - 5677360..5677881 (-) 522 WP_003060093.1 pilin -
  F0Q02_RS25985 - 5678070..5678789 (-) 720 WP_003060091.1 FHA domain-containing protein -
  F0Q02_RS25990 ssb 5679102..5679650 (-) 549 WP_003060089.1 single-stranded DNA-binding protein Machinery gene
  F0Q02_RS25995 - 5679909..5681135 (-) 1227 WP_404851300.1 MFS transporter -
  F0Q02_RS26000 uvrA 5681573..5684641 (+) 3069 WP_003060085.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19946.07 Da        Isoelectric Point: 5.9469

>NTDB_id=385241 F0Q02_RS25990 WP_003060089.1 5679102..5679650(-) (ssb) [Comamonas testosteroni strain R5-28]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGQQQGGYGGDDGYGESSYQAPSRPAPAPMQQRPAPAPMQQRSAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=385241 F0Q02_RS25990 WP_003060089.1 5679102..5679650(-) (ssb) [Comamonas testosteroni strain R5-28]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGTACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGTGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGGCAGTATCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAATGGACCGATCAGGCCTCCGGCCAGGAGCGTTACGCTACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGTAGCCGCCAGGGCGGCGGTCAGCAGCAAGGCGGCTACGGTGGTGACGATGGCTATGGTGAAAGCAGCTATC
AGGCGCCCAGCCGTCCAGCTCCCGCGCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTTCTGCTCCCGCA
CCCATGGCTCCTCCTCCCCAGCGCGCTGCGTCGGGGTTTGACGACATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N7W6A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.588
  ssb Glaesserella parasuis strain SC1401

50.51

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.505

100

0.445

Multiple sequence alignment