Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BAMF_RS40350 Genome accession   NC_014551
Coordinates   3963647..3964165 (-) Length   172 a.a.
NCBI ID   WP_013354263.1    Uniprot ID   A0A9P1JL20
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3958647..3969165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS40320 (BAMF_3898) - 3959832..3960212 (-) 381 WP_013354257.1 VOC family protein -
  BAMF_RS40325 - 3960269..3961208 (-) 940 Protein_4003 LacI family DNA-binding transcriptional regulator -
  BAMF_RS40330 (BAMF_3901) xth 3961271..3962029 (-) 759 WP_013354260.1 exodeoxyribonuclease III -
  BAMF_RS40335 (BAMF_3902) - 3962068..3962595 (-) 528 WP_013354261.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BAMF_RS40340 (BAMF_3903) - 3962588..3963175 (-) 588 WP_013354262.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  BAMF_RS40345 (BAMF_3904) rpsR 3963364..3963603 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  BAMF_RS40350 (BAMF_3905) ssbA 3963647..3964165 (-) 519 WP_013354263.1 single-stranded DNA-binding protein SsbA Machinery gene
  BAMF_RS40355 (BAMF_3906) rpsF 3964205..3964492 (-) 288 WP_013354264.1 30S ribosomal protein S6 -
  BAMF_RS40360 (BAMF_3907) ychF 3964604..3965704 (-) 1101 WP_013354265.1 redox-regulated ATPase YchF -
  BAMF_RS40365 (BAMF_3908) - 3965831..3967834 (-) 2004 WP_013354266.1 molybdopterin-dependent oxidoreductase -
  BAMF_RS40370 (BAMF_3909) - 3967881..3968087 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18717.29 Da        Isoelectric Point: 4.7621

>NTDB_id=38521 BAMF_RS40350 WP_013354263.1 3963647..3964165(-) (ssbA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRKQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=38521 BAMF_RS40350 WP_013354263.1 3963647..3964165(-) (ssbA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTAACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCTGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAAACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGTCTTCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGTTCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372

Multiple sequence alignment