Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   F0P98_RS04125 Genome accession   NZ_CP043570
Coordinates   931095..932153 (+) Length   352 a.a.
NCBI ID   WP_054668759.1    Uniprot ID   -
Organism   Stenotrophomonas acidaminiphila strain T25-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926095..937153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P98_RS04115 - 927740..928366 (-) 627 WP_056931182.1 hypothetical protein -
  F0P98_RS04120 - 928445..930877 (-) 2433 WP_056931183.1 penicillin-binding protein 1A -
  F0P98_RS04125 pilM 931095..932153 (+) 1059 WP_054668759.1 pilus assembly protein PilM Machinery gene
  F0P98_RS04130 - 932153..932713 (+) 561 Protein_812 PilN domain-containing protein -
  F0P98_RS04135 pilO 932809..933486 (+) 678 WP_056931185.1 type 4a pilus biogenesis protein PilO -
  F0P98_RS04140 - 933486..934022 (+) 537 WP_056931186.1 pilus assembly protein PilP -
  F0P98_RS04145 - 934044..935936 (+) 1893 WP_056931187.1 type IV pilus secretin PilQ family protein -
  F0P98_RS04150 - 936050..937060 (+) 1011 WP_182212728.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37395.95 Da        Isoelectric Point: 4.4316

>NTDB_id=385206 F0P98_RS04125 WP_054668759.1 931095..932153(+) (pilM) [Stenotrophomonas acidaminiphila strain T25-65]
MGLIPKSQPPIIGVDISSTAVKLLQLARSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVARSGTRAKGAAAA
VAGSAVITKVIPMPADLDEADLEAQVELEAVNYIPYPIEEVSLDFEVLGPVPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAIENAFALVASELPVASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQIGRLLQFFYAGSEFNRVDHIVLAGGCASLPGLPVMVEEQLGVSTSVANPLA
QMTLGQKVQAHALAQDAPALMIATGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=385206 F0P98_RS04125 WP_054668759.1 931095..932153(+) (pilM) [Stenotrophomonas acidaminiphila strain T25-65]
GTGGGGCTTATCCCAAAGAGTCAACCACCGATCATCGGTGTTGACATCAGCTCGACTGCGGTAAAGCTGCTTCAGCTTGC
CCGCAGCGGCAATCGTTTTCGCGTGGAACATTACGCCGTGGAACCGCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAGGCCATACGCCGGGCCGTGGCGCGCTCGGGAACCCGGGCCAAGGGGGCGGCTGCCGCG
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGCCGACCTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTATCCGATCGAGGAAGTGAGCCTGGACTTCGAGGTGCTCGGGCCGGTGCCCAACA
ACCCGGAAATGGTCCAGGTGCTGTTGGCGGCCTCGCGCTCGGAGAACGTCGAACTGCGCCAGTCGGCGCTGGAGCTGGGC
GGGCTGGTGGCCAAGGTCATGGACGTGGAAGCGTTCGCGATCGAGAACGCCTTCGCGCTGGTGGCCAGCGAACTGCCGGT
GGCCAGTGACGGCGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACCACGCTCAACGTCCTGCGTGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGCTACGGGCTGAGCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCGGCCGCCTGTTGCAGTTCTTCTATGCCGGCAGCGAGTTCAATCGCGTCGATCACATCGTGCTGGCCGGTG
GCTGCGCTTCGCTGCCCGGGCTGCCGGTGATGGTCGAGGAACAACTGGGGGTGAGCACGTCGGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGACAGAAGGTGCAGGCGCATGCGCTGGCCCAGGATGCCCCGGCGCTGATGATCGCCACCGGCCTGGC
CCTGCGGGGGTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

100

0.5
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

50.292

97.159

0.489
  pilM Legionella pneumophila strain ERS1305867

46.571

99.432

0.463

Multiple sequence alignment